Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq535 237 1e-57 seq1903 159 3e-34 >seq535 Length=62126 Score = 237 bits (262), Expect = 1e-57 Identities = 579/857 (68%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||||||||| || || ||||||||||| | || ||| | ||| || Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201 ||||| || || | |||||| | || | | ||| | | ||| || ||||| Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 15530 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| ||||||||||| || || || || ||||| ||||| | | || | Sbjct 15529 CTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGC 15470 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || | ||||| || | | ||||| || || ||||||||||||||||| Sbjct 15469 GCTTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 15411 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378 |||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| | Sbjct 15410 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 15351 Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG-GCGGTGAAGCGGAAA 61437 | | | | || | ||||| ||||| ||||| || || || | || ||| Sbjct 15350 AGCCAGCGCAGCTACC--TCTTCAACGCCATTGAGACCATTCCTTGCATTC--GCAAAAA 15295 Query 61438 G-CGGATTGGGCCTTCAATTGGAT-CACCAGTACAACGGCTACATTTGGTGAACGATTGC 61495 | | || |||||| |||| ||||| || | | ||| || | |||| | || || Sbjct 15294 GGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACT-CTTCCTTTGCCCAGCGCCTGG 15236 Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 | || ||||| | |||||||| | || ||||| || | |||||| | ||||| ||| Sbjct 15235 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGG 15176 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 | ||||| || || || ||||| ||||||||||| ||| ||| | || || || || | Sbjct 15175 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGATG 15116 Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 |||| |||| ||| ||||| ||| | || | | | || ||| ||| | Sbjct 15115 AGGGTCTGCACACTGACTTTGCCTGCCTGC--TGCACTCTC-ACCTCAAGAACCGTGCCA 15059 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 ||||| | |||| || | || || || || || ||||| || ||| Sbjct 15058 GCAAGGAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGA 14999 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | || ||| | ||| | | | | |||||||| | | || ||| |||||| |||| Sbjct 14998 CCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATTG 14939 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAA 61854 | |||||||||||||| ||| |||||| | | || | ||| || |||| || | Sbjct 14938 AGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGG-TCTACAAGTCTTCC 14880 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| ||||| |||||||| | ||||| || | ||||||||| || || |||||||| Sbjct 14879 AACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAG 14820 Query 61915 CGTGTAGGCGACTATCA 61931 || || | |||||| || Sbjct 14819 CGCGTCGCCGACTACCA 14803 >seq1903 Length=20131 Score = 159 bits (176), Expect = 3e-34 Identities = 428/648 (66%), Gaps = 26/648 (4%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||| | ||| || | |||||| || || | ||| || || || ||||||| Sbjct 4702 GGGAGGGCCAAAGAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCACAGTACTCGATG 4761 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || |||||||| || || || ||| ||||| |||| |||| ||| || |||||||| Sbjct 4762 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCGG 4821 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||| | |||| | || | || ||||| |||| || | |||| Sbjct 4822 TTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATG 4881 Query 66182 GCGTGCCAAAG------AGCGCGT---GCCTTC--ACCGTACGTACCGCCCTACCTTTGC 66230 | | ||| || |||||| | ||| ||| |||| |||| |||| Sbjct 4882 GAATACCACAGCTTCTGAGCGCGGATGGTCTTGCGACC--ACGT----CCCT-CCTTC-- 4932 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGG 66288 ||||| | || || | | ||||| | | | ||||| || | || | || Sbjct 4933 --TCGTACTTCTCATACAAGGCCTCGAAC--TCCTCGCCATAGCAGTCAGCAAGGCCAGG 4988 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 ||| | || || ||||| |||| ||| || | || || ||||| ||| || || Sbjct 4989 ACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAG 5048 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 || || |||||||| || ||| | ||||| || || ||| || ||||||| || Sbjct 5049 GTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTT 5108 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| | || ||||||||||||| |||||| ||||| || || ||||||||||| || Sbjct 5109 CTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAA 5168 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | || ||| ||| ||||| || ||||| || | || |||||||| || || Sbjct 5169 AGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCG 5228 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGC 66588 | ||| || | | ||||| || | || |||||||| | ||| || || || Sbjct 5229 AAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGC 5288 Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 || || ||| || |||| || |||||||| ||| | || || || Sbjct 5289 ACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATTTTGGAAAT 5336 Score = 111 bits (122), Expect = 1e-19 Identities = 325/492 (66%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || | | ||| || |||| || | || |||||||||||||| Sbjct 3795 ATCAACGGTGAATTGAATGGGAGCAGCTGCGGCCTGAGTGCGCAGGTAGTACATGCCGGT 3854 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || |||| |||| | | | || | Sbjct 3855 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGGT 3913 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| ||||| ||| || ||| || ||||||||| || |||| Sbjct 3914 CCTTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGATCAGCCGCCA 3973 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | || | || || |||||||| ||||||||||||| | | | | | || Sbjct 3974 TCTGGACAATTTGGCGCTGAGAAATCTCCCACACGGTCTTGTACAAG-GCCTTGATATCT 4032 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | || || ||||| || || || ||| Sbjct 4033 TCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 4092 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432 | || ||||| | || |||| || | |||| ||| | | |||| || | Sbjct 4093 GCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAG--AAGCCAGGGGTTGACAACCT 4150 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | | Sbjct 4151 GGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACT 4210 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| ||||| |||| ||| ||||| |||||||| ||||| | ||| || Sbjct 4211 CGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACGAGCAAGCTGT 4270 Query 65553 TTCGCAATCCGT 65564 | |||| |||| Sbjct 4271 TGCGCACACCGT 4282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556589177200