Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20reesei_20[genbank_20GCA_5F001999515.1_202017-02-13] 167 sequences; 32,472,817 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq138 334 6e-87 seq86 239 4e-58 >seq138 Length=1076999 Score = 334 bits (370), Expect = 6e-87 Identities = 1220/1886 (65%), Gaps = 64/1886 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | ||| || |||| ||| | || |||||||||||||| Sbjct 837916 ATCAACGGTGAACTGGATAGGCGCAGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGT 837857 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194 |||||| || ||| ||| | ||| ||||| | || |||| |||| | | || Sbjct 837856 CTTGAGACCGAGCTT-CCAGCCGGTGAAGTGCAT-GCTGGTAATCTTGCCCATCGTGGGG 837799 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || || | ||||| ||| |||||| || ||||||||| || ||| Sbjct 837798 TCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATCAGCCGCC 837739 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGC----GACGTAC 65310 || | | || |||| || |||||||||||||||||||||||| || || | Sbjct 837738 ATCTGGACAATTTGACGCTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATGT-C 837680 Query 65311 CTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACG 65370 ||| || || | ||||| ||||| || || ||||| ||||| || Sbjct 837679 CTCG---GGGATGTTGGGAATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTCTT 837623 Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATG 65428 ||| | || ||||||| || |||| || | |||| ||| | | |||| Sbjct 837622 CATGGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGAG--AAGCCAGGGGTTGACA 837565 Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || |||||||| || | || ||||| || ||||||||||| ||| ||| || ||| Sbjct 837564 ACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAG 837505 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 |||| ||||||| || || || | ||| ||||| ||||| |||||||| | ||| Sbjct 837504 CATTCGTTGTTGCCCAGGATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACAAGCAAG 837445 Query 65549 GAGTTTCGCAATCCGT--TCATTTCAATGTTG--TGACGCAATTCGTCCCAGTTCCACAT 65604 ||| || | |||| || || || | ||| | | |||||| | ||||| Sbjct 837444 CTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGA----GTCCCACTCCCACA- 837390 Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGG 65664 ||| || | | ||| |||||| || | || ||| | || | || || Sbjct 837389 -GGT----CGGAGGGCTTGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAGG 837335 Query 65665 TGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT----GACAGCTGGTCT 65720 || || ||| || || ||||| ||||||||| | | |||| | Sbjct 837334 CGATCCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCT----T 837279 Query 65721 CGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGC 65780 | || |||||| |||||||||||||| || | || || || || ||||| Sbjct 837278 CAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAG 837219 Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 ||| | |||| || || || || | ||| || || || || || || | ||||| Sbjct 837218 ACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGGCCCTGGACACCGACACCGA 837159 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 | || || || |||| ||| | ||||| | || ||||||| || | ||||| Sbjct 837158 TAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACGGGGTAGTGGTTCACATCGA 837099 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCA 65959 | ||||| || | ||||| ||||| | || | ||| || || ||| || Sbjct 837098 TGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTT-GAAGTCG 837040 Query 65960 AAATGTTTAGGA-CGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGAT 66016 ||| | | ||| | ||| | ||||| ||||||||| ||||| Sbjct 837039 -------TAGCAGCCCTCGTTGTAGT--------CAACAAAGGCGGGAAGGGCCAGAGAG 836995 Query 66017 GCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGA 66076 || | ||||||||| || | |||||| || || ||||| | || |||||||| || Sbjct 836994 GCCAAGTTGCAGACGGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCGGTGCAGAGG 836935 Query 66077 TTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTG 66136 ||| || ||| ||||||||||| |||| || || |||||||| ||||| |||||| Sbjct 836934 TTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTG 836875 Query 66137 TACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCG 66196 || | |||| | || | |||||||| |||| ||| | |||| || ||| || Sbjct 836874 TAGAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCCAGAATGGAGTACCACAGCTTC 836815 Query 66197 CGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTC 66255 | || | || | ||| || | || | | ||||| | |||||| || || Sbjct 836814 TGAGCACGAATGGT-CTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTC 836756 Query 66256 GAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 || || || | || | || | || || | || || ||||| |||| ||| Sbjct 836755 AAACTCCTCGCCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCA 836696 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 || | || || ||||| ||| || ||||| || ||||| || || ||| | Sbjct 836695 GTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAA 836636 Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 ||||| || || |||||| ||||||| || ||||| | || ||||| ||||||| Sbjct 836635 GTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGAC 836576 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 |||||| ||||| || || |||||||||||||| | || ||| ||| |||||| || Sbjct 836575 GTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTG 836516 Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555 ||||||||| || || ||||||||||| |||| ||| || | | ||||| || | Sbjct 836515 GTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGT 836456 Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAAT 66615 ||| ||||||||| ||||| ||| || || || || ||| || |||| ||| || Sbjct 836455 GCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAAACCGAT 836396 Query 66616 ACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCGTCA 66673 |||||| ||| |||| ||||| ||||| || | || || | || || ||| Sbjct 836395 ACCACCAGCCATCTTGGAGATCATGGCACA--CGTCTTCAGAGTGTCATAGATACCCTCA 836338 Query 66674 ATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCG 66733 ||| |||| |||| ||| || | | ||||||| || |||| || || || | Sbjct 836337 ATGCTGTCATCCTTCATGTCCACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCA 836278 Query 66734 GCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTC 66793 || ||||||||| || | ||||| || ||| | | || |||||| | ||| ||| Sbjct 836277 GCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTC 836218 Query 66794 TCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTAT 66853 |||| |||| ||||||| || || || || | || |||||| | | || Sbjct 836217 TCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGC 836158 Query 66854 TGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTG 66913 || ||||| ||||| | | | | || | || | ||| || || ||||| |||||| Sbjct 836157 TGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGGTATGATCGCTCCAGCGTCTTG 836098 Query 66914 ATACCAAAGTACGAGTAATTGAAATC 66939 | |||||||| ||| ||||| || Sbjct 836097 AAGCCAAAGTATTGGTAGTTGAAGTC 836072 >seq86 Length=1711676 Score = 239 bits (264), Expect = 4e-58 Identities = 584/860 (68%), Gaps = 30/860 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || |||||||||||||| | || ||| | || || Sbjct 1357813 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 1357872 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201 ||||| ||| || | |||||| | || | | ||| | | ||| || ||||| Sbjct 1357873 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 1357930 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| ||||| ||||| |||||||| || ||||| ||||| | | || | Sbjct 1357931 CTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGC 1357990 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || | ||||| || | | ||||| || || ||||||||||||||||| Sbjct 1357991 GCTTCA-GCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATG 1358049 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| ||||||| |||| |||| | |||||||| || ||||||| ||||| Sbjct 1358050 ATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTACATCAAGGAGCAC 1358109 Query 61381 GCGGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACC-GGCGGT-GAAGCGGAAA 61437 | || ||| | | ||||| ||||| ||||| || || || | | | ||| Sbjct 1358110 AGCCAGCG-CAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCA--AGAAG 1358166 Query 61438 GCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTG 61494 || || ||||| ||| | ||||| |||| |||| || | |||| | || | Sbjct 1358167 GCCGACTGGGCGATTCGA-TGGAT--CCAGGACAAGAACTCGTCCTTTGCCCAGCGCCTC 1358223 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||| | |||||||| | || ||||| || | |||||| | ||||| ||| Sbjct 1358224 GTTGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 1358283 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 | ||||| || || || |||||||| |||||||| ||| ||| | || || || ||| Sbjct 1358284 CTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 1358343 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 ||||| |||| || ||||| ||| | || | | | ||| ||| || || Sbjct 1358344 GAGGGTCTGCACACGGACTTTGCCTGCCTGC--TGCACTCTC-ACCTGAAGAACCG--CG 1358398 Query 61675 TCGG--AGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTT 61731 | | ||||| ||| | |||| || | || || || ||||| ||||| ||| Sbjct 1358399 CCAGCAAGGAG-GTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTT 1358457 Query 61732 CTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTAT 61791 |||| || ||| |||| | | || | |||||||| | || ||| |||||| Sbjct 1358458 TTGACCGAGGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTAC 1358517 Query 61792 ATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACG 61851 ||||| |||||||||||||| ||| |||| | | || | || | | || || || Sbjct 1358518 ATTGAGTTTGTTGCCGACCGCCTGCTGGTTGCCCTCGGCAATGAGAAGGTGTACAAGTCG 1358577 Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 ||||| ||||| || ||||| | ||||| |||| |||||||| || || |||||| Sbjct 1358578 TCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTCGAG 1358637 Query 61912 AAACGTGTAGGCGACTATCA 61931 || || || | |||||| || Sbjct 1358638 AAGCGCGTCGCCGACTACCA 1358657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567190824880