Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq68 161 4e-37 >seq68 Length=209871 Score = 161 bits (178), Expect = 4e-37 Identities = 148/184 (80%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 367 CCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGAC 426 |||||| | || ||||||||||| ||||||| |||| |||||||| || |||||| Sbjct 63928 CCGCGCATCTGCAAGGATGCTGGCATAATGGTCACCAGCGACCCGTCTTAAAAAACGGAC 63987 Query 427 CAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT 485 ||||||||| | || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 63988 CAAGGAGTC-GTCTTCGTATGCGAGTGTTTGGGTGTCAAACCCCTGCGCGTAATGAAAGC 64046 Query 486 GAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA 545 ||||| || ||||| | || ||| |||||| |||||||||||| |||||||| Sbjct 64047 GAACGCAGATGGGA----GCTTTGGCGCATCATCGATCGATCCTGATGTTCTCGGATGGG 64102 Query 546 TTTG 549 |||| Sbjct 64103 TTTG 64106 Score = 113 bits (124), Expect = 2e-22 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||| ||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| | Sbjct 23645 AGAAGGTGAACTATGCCTGTGTAGGGTGAAGCCAGAGGAAACCCTGCTGGAGAACCGCTG 23704 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 || |||||||||||||||||| ||||||| |||| Sbjct 23705 TGGCTCTGGCGTGCAAATCGATGGTCAAATATGGG 23739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997704850