Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq67 109 2e-21 seq48 86.0 2e-14 >seq67 Length=51654 Score = 109 bits (120), Expect = 2e-21 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 31 TTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGC 90 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13834 TTCTCCAAGAGCCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGC 13775 Query 91 CAAAC 95 ||||| Sbjct 13774 CAAAC 13770 >seq48 Length=508424 Score = 86.0 bits (94), Expect = 2e-14 Identities = 91/120 (76%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCT-----TAGGACACCTGCGTTATGGTTTAACAGA 76 ||| || |||||| ||| || |||| | | || || ||||||||||||| || || Sbjct 174506 AGAATTATGTTCTTCATCAGCCCCCTTGCATGTCGGTCATCTGCGTTATGGTTAAAGGGA 174447 Query 77 TGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAA 136 | | |||||||| |||| |||| |||| | ||||| ||| ||||| |||||||||||| Sbjct 174446 TATATTGCCCCAGCAAAACACCCCGCCTGTCGATGTCTTCACCCCGGGTCGGCCCGCGAA 174387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198250336