Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1 167 4e-39 seq105 150 3e-34 >seq1 Length=17084797 Score = 167 bits (184), Expect = 4e-39 Identities = 183/237 (77%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 43 GCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 |||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 13365037 GCTGTCCGACCGGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCC 13364978 Query 103 AAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAA 162 ||||||||||||||||||||||| ||||| | || || |||| | ||| |||| | ||| Sbjct 13364977 AAGTCAGAATCCATGCCAGAACGCGGTGA-TATCACCCGCAC-TTATAGACGGACAAGAA 13364920 Query 163 TAGGCTTCGGCCCCGAACCTTAGCAGGC-CGGCAACGGGCGTCCCGCGGAAGCGCGGGGC 221 ||||| ||||| || ||||||| | | | |||| |||||| | || Sbjct 13364919 TAGGCCTCGGCTTACTGTCTCAGCAGGCGATTCCTCCGTGGTCC--TCGAAGCGGGCCGC 13364862 Query 222 GCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | || | || |||||||||||| || | || ||| | ||||||||||||| ||| Sbjct 13364861 G-GCATTTCACGTATTGCAATTTCAACACGAGCGGGGTTGAATCCTTTGCAGATGAC 13364806 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/82 (82%), Gaps = 6/82 (7%) Strand=Plus/Plus Query 56 GCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT------AAGTCAG 109 |||||||||||||| ||||||||||||| | |||||||| | ||||| ||| ||| Sbjct 5111890 GCAGTGCCGCGAAGTTACCATCTGCTGGGTAATGGCTGAGCACCTCTAAGATGAAGCCAG 5111949 Query 110 AATCCATGCCAGAACGGGGTGA 131 |||||| |||| |||| ||||| Sbjct 5111950 AATCCACGCCACAACGTGGTGA 5111971 >seq105 Length=160586 Score = 150 bits (166), Expect = 3e-34 Identities = 142/173 (82%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || ||| || || ||||| |||| |||| ||||||||||| Sbjct 140796 GTACGAGAGGAACCGCTTATTT-AGA-TATTTAGTTTT-GCGGTTGTCCGACCAGGCAGT 140740 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||| |||||||| || |||||||||||||||||| |||| ||||||| Sbjct 140739 ACCGCGAAGCTACCATGTGCTGGATAATAGCTGAACGCCTCTAAGTCGGAATTCATGCCA 140680 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173 ||||| | ||| | || |||||| ||| ||| | ||||||||||| || Sbjct 140679 GAACGCGATGA-AAACACC-GCACAT-ATAGATGGACAAGAATAGGCTTCAGC 140630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199150848