Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24]
107 sequences; 45,820,083 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1 167 4e-39
seq105 150 3e-34
>seq1
Length=17084797
Score = 167 bits (184), Expect = 4e-39
Identities = 183/237 (77%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 43 GCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102
|||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 13365037 GCTGTCCGACCGGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCC 13364978
Query 103 AAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAA 162
||||||||||||||||||||||| ||||| | || || |||| | ||| |||| | |||
Sbjct 13364977 AAGTCAGAATCCATGCCAGAACGCGGTGA-TATCACCCGCAC-TTATAGACGGACAAGAA 13364920
Query 163 TAGGCTTCGGCCCCGAACCTTAGCAGGC-CGGCAACGGGCGTCCCGCGGAAGCGCGGGGC 221
||||| ||||| || ||||||| | | | |||| |||||| | ||
Sbjct 13364919 TAGGCCTCGGCTTACTGTCTCAGCAGGCGATTCCTCCGTGGTCC--TCGAAGCGGGCCGC 13364862
Query 222 GCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
| || | || |||||||||||| || | || ||| | ||||||||||||| |||
Sbjct 13364861 G-GCATTTCACGTATTGCAATTTCAACACGAGCGGGGTTGAATCCTTTGCAGATGAC 13364806
Score = 82.4 bits (90), Expect = 1e-13
Identities = 67/82 (82%), Gaps = 6/82 (7%)
Strand=Plus/Plus
Query 56 GCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT------AAGTCAG 109
|||||||||||||| ||||||||||||| | |||||||| | ||||| ||| |||
Sbjct 5111890 GCAGTGCCGCGAAGTTACCATCTGCTGGGTAATGGCTGAGCACCTCTAAGATGAAGCCAG 5111949
Query 110 AATCCATGCCAGAACGGGGTGA 131
|||||| |||| |||| |||||
Sbjct 5111950 AATCCACGCCACAACGTGGTGA 5111971
>seq105
Length=160586
Score = 150 bits (166), Expect = 3e-34
Identities = 142/173 (82%), Gaps = 6/173 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | || ||| || || ||||| |||| |||| |||||||||||
Sbjct 140796 GTACGAGAGGAACCGCTTATTT-AGA-TATTTAGTTTT-GCGGTTGTCCGACCAGGCAGT 140740
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||| |||||||| || |||||||||||||||||| |||| |||||||
Sbjct 140739 ACCGCGAAGCTACCATGTGCTGGATAATAGCTGAACGCCTCTAAGTCGGAATTCATGCCA 140680
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173
||||| | ||| | || |||||| ||| ||| | ||||||||||| ||
Sbjct 140679 GAACGCGATGA-AAACACC-GCACAT-ATAGATGGACAAGAATAGGCTTCAGC 140630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199150848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |