Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq93 232 5e-56 seq97 223 3e-53 >seq93 Length=305044 Score = 232 bits (256), Expect = 5e-56 Identities = 1130/1769 (64%), Gaps = 84/1769 (5%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | ||| || |||| ||| | |||||||||||||||||| Sbjct 223863 ATCAACGGTGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGT 223922 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || |||| |||| | | | || | Sbjct 223923 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGGT 223981 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| ||||| ||| || ||| || |||||| || || |||| Sbjct 223982 CCTTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCA 224041 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACG-TA-CCT 65312 | | | || | || || |||||||||||||||||||||| || | || ||| Sbjct 224042 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATCCT 224101 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 | || || | |||| ||| | || || |||||||| || || || Sbjct 224102 CG---GGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAATACGGTTCTTCA 224158 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTT---GAA-CCAAGTGACGATTGATG 65428 | | || ||||| | || |||| || | | ||| ||||| | |||| Sbjct 224159 TGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAAGGG----TTGACA 224214 Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || ||||||||||||| || ||||| || ||||||||||| ||| ||| || ||| Sbjct 224215 ACCTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAG 224274 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 | ||| ||||||| || || |||| ||| ||||||||||| || || || | ||| Sbjct 224275 CACTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAG 224334 Query 65549 GAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGC---AATTCGTCCCAGTTCCACA-- 65603 ||| |||| |||| | || || | || | | |||||| | ||||| Sbjct 224335 CTGTTGCGCACACCGTGC---TCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCACAAG 224391 Query 65604 TCGGTTTATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCC 65662 |||| | | | ||||||| ||||| || ||| ||| | || | || Sbjct 224392 TCGG---AGGGCTTGACATCC------CACATGTCGAATTGAAGGATGCCCTCAGATGCA 224442 Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGGTCTC 65721 ||||| || ||| | ||| ||||| ||||||||| | | || | ||| Sbjct 224443 GGTGATCCCTTGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGC-CTC 224501 Query 65722 GAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCT 65781 || || || || || ||||| || || | || || || || |||||| Sbjct 224502 AAGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGA 224561 Query 65782 CTCGTACGGCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAATACC 65838 ||| | ||||| | || || ||| ||| || || ||||| || || |||| ||| Sbjct 224562 CTCAAAAGGCATGCGCA---GGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACC 224618 Query 65839 GATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATC 65898 ||| || | ||||||| ||| | ||||| | |||||||||| || | ||| Sbjct 224619 GATAGGTCTGTGACGCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATC 224678 Query 65899 GATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATC 65958 ||||| |||| || || ||||| | || | ||| | ||| | Sbjct 224679 AATAATCTTGTTCAGGTTACGGACAACCACCTTGGTGA--CTTCGTGAAGCTTC----TT 224732 Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 ||| | | || || | | || | | ||| | || ||||| | ||| || Sbjct 224733 AAAGTCAT-AGCACCCTTCGTTGT-----AGTCGACATAGGCAGGGAGGGCCAAAGAGGC 224786 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 | |||||||||||| | ||| ||||| || ||||| | ||| || ||||| || || Sbjct 224787 CAAGTTGCAGACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTT 224846 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 | || ||| ||||| |||| |||| || || |||||||| ||||| |||||||| Sbjct 224847 AGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTA 224906 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG------ 66192 | |||| | || |||| ||||| |||| || | ||||| | ||| || Sbjct 224907 GAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTG 224966 Query 66193 AGCGCGT---GCCTTC--ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAG 66247 |||||| | ||| ||| |||| |||| |||| ||||| | || || Sbjct 224967 AGCGCGGATAGTCTTGCGACC--ACGT----CCCT-CCTTC----TCGTACTTCTCATAC 225015 Query 66248 AGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACA 66305 | ||||| | | | ||||| || | || | || |||| || || |||| Sbjct 225016 AAAGCCTCGAAC--TCCTCGCCATAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACA 225073 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 | |||| ||| || | || || ||||| ||| || ||||| || |||||||| | Sbjct 225074 TGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAG 225133 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 | ||| | ||||| || || |||||| | ||||| || ||||| | || |||| Sbjct 225134 CAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGA 225193 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 ||||||||| || || |||||||| |||||||||||||| || | || ||| ||| Sbjct 225194 ACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTTGT 225253 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 |||||| ||||||||||| | || ||||||||||| || | ||| || | || | Sbjct 225254 TGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATAC 225313 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 |||| || | || |||||||| | ||| || || || || || ||| || | Sbjct 225314 CGTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGATGCGGTGGACGT 225373 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAA 66663 ||| || || || || ||| |||| || || ||||| || | || || | Sbjct 225374 TCAAGCCGATGCCGCCAGCCATCTTGGAAATCATGGCACA--CGTCTTCAGAGTGTCATA 225431 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTT 66723 || || |||||| || |||| ||| | | | |||||||| || |||| | Sbjct 225432 GATACCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCTGGGCCTG 225491 Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA 66783 || || | || |||||||||||| | ||||| || ||| | | || |||||| Sbjct 225492 CGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGACATGAG 225551 Query 66784 ATTGTACGTCTCGATGACAGCATCAATGT 66812 | ||| ||||| | |||| ||||||| Sbjct 225552 GTGGTATGTCTCCAGGACACGCTCAATGT 225580 >seq97 Length=261666 Score = 223 bits (246), Expect = 3e-53 Identities = 583/864 (67%), Gaps = 38/864 (4%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | || ||| | || || Sbjct 3205 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGACCTG 3264 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201 ||||| || || | |||||| | || | | ||| | | ||| || ||||| Sbjct 3265 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 3322 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| ||||||||||| || || || || ||||| ||||| | | || | Sbjct 3323 CTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGC 3382 Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| ||| ||||| || | | ||||| || || ||||||||||||||||| Sbjct 3383 GCTTCAGCG-GCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 3441 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378 |||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| | Sbjct 3442 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 3501 Query 61379 GGGCGGAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACC-GGCGGT-GAAGCGGA 61435 | | | || ||| || | ||||| ||||| ||||| || || || | | | || Sbjct 3502 AGCC--AGCG-CAACTATCTCTTCAACGCCATTGAGACTATCCCTTGCATTCGCA--AGA 3556 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACCAGTACA--ACGGCTACATTTGGTGAACGATT 61493 | || || |||||| |||| ||||| |||| ||| | || | |||| | | || | Sbjct 3557 AGGCTGACTGGGCCATCAAGTGGAT--CCAGGACAAGAACTCTTCCTTTGCTCAGCGCCT 3614 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | | || ||||| | ||||||||| | || ||||| || | ||||| | ||||| || Sbjct 3615 GGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCCATCTTCTG 3674 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| || || || |||||||| |||||||| ||| ||| | || || || || Sbjct 3675 GCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGA 3734 Query 61614 CGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||| |||| || |||| ||| | |||| | || | | || ||| || Sbjct 3735 CGAGGGTCTGCACACCGACTTTGCCTGCCTGTTGC-ACTC-----CCACCTCAAGAACCG 3788 Query 61671 TCCGTCGG--AGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGA 61727 || | | ||||| ||| | |||| || | || || || || || || || Sbjct 3789 --CGCCAGCAAGGAG-GTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGA 3845 Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 || |||| || ||| | ||| | | || | |||||||| | | ||| ||| Sbjct 3846 GTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTGGGCATGAACTCCAACTTGATGAAGCA 3905 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAA 61847 ||| || || |||||||| ||||| ||| | || | | | || | || |||||| || Sbjct 3906 GTACATCGAGTTTGTTGCTGACCGCCTGCTTGTTGCTCTCGGCAACGAGAAGATCTACAA 3965 Query 61848 TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 | ||||| ||||| || ||||| | ||||| || | ||||||||| || || || Sbjct 3966 GTCTTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTTGGTGGCAAGACCAACTTCTT 4025 Query 61908 CGAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||| | |||||| || Sbjct 4026 TGAGAAGCGTGTTGCCGACTACCA 4049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567481546480