Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq139 293 4e-77 seq50 104 4e-20 >seq139 Length=270994 Score = 293 bits (324), Expect = 4e-77 Identities = 191/210 (91%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135755 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 135696 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||||| Sbjct 135695 CATCGAAGGATCAAAAAGCGATGTCGCTATCAACGCTTGGCCGCCACAAGCCAGTTATCC 135636 Query 211 CTGTGGT-----AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 ||||||| | || ||||||||||||||||| ||| ||||| ||||||||||||| Sbjct 135635 CTGTGGTGGTTGGAGCTTCCTGGCACCTCTAGCCTCCAATGTCGAGAGACTAAAGGATCG 135576 Query 266 ATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||| ||| |||||||||||||||| Sbjct 135575 ATAGGCCATACTCACATGGTTTGTATTCAC 135546 Score = 131 bits (144), Expect = 3e-28 Identities = 83/89 (93%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 4 TAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGA 63 ||||| ||||||||||| || || |||||||||||||||||||||||||||||||| || Sbjct 136325 TAAGCTCAATTACCATTGCGGGGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCACGA 136267 Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||| Sbjct 136266 CGGTCTAAACCCAGCTCACGTTCCCTATT 136238 >seq50 Length=513 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398316832