Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq141 253 2e-62 seq7 206 2e-48 >seq141 Length=465755 Score = 253 bits (280), Expect = 2e-62 Identities = 582/860 (68%), Gaps = 30/860 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | || ||| | ||| || Sbjct 372902 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 372843 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201 ||||| || || | |||||| | || | | ||| | | ||| || ||||| Sbjct 372842 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 372785 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| ||||||||||| || ||||| || ||||| ||||| | | || | Sbjct 372784 CTCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAGC 372725 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || | ||||| || | | ||||| || || ||||||||||||||||| Sbjct 372724 GCTTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 372666 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378 |||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| | Sbjct 372665 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 372606 Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG 61438 | | | | || | ||||| ||||| ||||| || || || | | | ||| Sbjct 372605 AGCCAGCGCAGCTACC--TCTTCAACGCCATTGAGACCATTCCT----TGCATCCGCAAG 372552 Query 61439 ----CGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGAT 61492 | || |||||| |||| |||||| ||| |||| || | |||| | || Sbjct 372551 AAGGCCGACTGGGCCATCAAGTGGATC--CAGGACAAGAACTCTTCCTTTGCCCAGCGCC 372494 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | || ||||| | ||||||||| | || ||||| || | |||||| | ||||| | Sbjct 372493 TGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCT 372434 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| || || || ||||| ||||||||||| ||| ||| | || || || | Sbjct 372433 GGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTG 372374 Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672 ||||||| | || || ||||| |||| || | | | || ||| ||| Sbjct 372373 ACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTG--CACTCTC-ACCTCAAGAACCGTG 372317 Query 61673 CGTCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTT 61731 | ||||| ||| | |||| || | ||| || || || || |||||||| Sbjct 372316 CCAGCAAGGAG-GTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAATTC 372258 Query 61732 CTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTAT 61791 |||| || ||| | ||| | | || |||||||||| | || ||| |||||| Sbjct 372257 TTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTAC 372198 Query 61792 ATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACG 61851 || || |||||||||||||||||| | |||| | | || | || |||||| || | Sbjct 372197 ATCGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCT 372138 Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 ||||| ||||| |||||||| | ||||| || | |||||||| || ||||||||| Sbjct 372137 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAG 372078 Query 61912 AAACGTGTAGGCGACTATCA 61931 || || || | |||||| || Sbjct 372077 AAGCGCGTCGCCGACTACCA 372058 >seq7 Length=2436850 Score = 206 bits (228), Expect = 2e-48 Identities = 1131/1773 (64%), Gaps = 92/1773 (5%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || | | ||| || |||| || | || |||||||||||||| Sbjct 488122 ATCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGT 488063 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || |||| |||| | | | || | Sbjct 488062 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGGT 488004 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| ||||| |||||| ||| || ||||||||| || |||| Sbjct 488003 CCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCA 487944 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | || | || || |||||||||||||||||||| ||| | | | | || Sbjct 487943 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGG-GCCTTGATATCT 487885 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | || ||| ||||| || || || ||| Sbjct 487884 TCGGGGATGTTGGGGATGTTCTGAATGGAGCCATTCTCAGCAATGATACGGTTCTTCATG 487825 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432 | || ||||| | || |||| || | |||| ||| | | |||| || | Sbjct 487824 GCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAG--AAGCCAGGGGTTGACAACCT 487767 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | | Sbjct 487766 GGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACT 487707 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| ||||| |||| ||| ||||||||||| || |||| | ||| || Sbjct 487706 CGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGT 487647 Query 65553 TTCGCAATCCGT--TCATTTCAATGTTG--TGACGCAATTCGTCCCAGTTCCACATCGGT 65608 | ||| |||| || || || | ||| || | |||||| | ||||| ||| Sbjct 487646 TGCGCGTACCGTGCTCCTTGATCTGCTCCTTGA-GCGA---GTCCCACTCCCACA--GGT 487593 Query 65609 TTATCGTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGCC 65662 | | ||||||| ||||| || ||| ||| | || ||| || Sbjct 487592 CAGAGGGCTTGACATCC------CACATGTCGAATTGGAGGATGCCCTCGGAT----GCA 487543 Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGGTCTC 65721 ||||| || ||| ||||| |||||| ||||||| | | | || | ||| Sbjct 487542 GGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGC-CTC 487484 Query 65722 GAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCT 65781 || || ||| || |||||||| || || | || || | ||| ||||| Sbjct 487483 AAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGA 487424 Query 65782 CTCGTACGGCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAATACC 65838 ||| | ||||| | || || ||| ||| |||||| ||||| || || |||| ||| Sbjct 487423 CTCAAAGGGCATGCGCA---GGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACC 487367 Query 65839 GATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATC 65898 ||||| || || |||| ||| | ||||| | |||||||||| |||| ||| Sbjct 487366 AATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATC 487307 Query 65899 GATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATC 65958 || || || | ||||| ||||| | || | || || | | || Sbjct 487306 AATGATCTTGTTAAGGTTGCGGACAACCACCTTGGTGA--CTTC---ATGGAGCT---TC 487255 Query 65959 AAAATGTT-TAGGA-CGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAG 66014 || || ||| | | ||| | ||| |||| | | || ||||| | || Sbjct 487254 TTAAAGTCGTAGCAGCCTTCGTTGTAGTC---GACATAAGCA-----GGGAGGGCCAAAG 487203 Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | || | |||||| ||||| | ||| || || || ||||||| ||| |||||||| | Sbjct 487202 AGGCCAAGTTGCAAACAGCAACCTCATCTGGGGCACAGTACTCGATAATCTCGGTGCAGA 487143 Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134 | || || ||| ||||| |||| |||| || || |||||||| ||||| ||||||| Sbjct 487142 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCT 487083 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG-- 66192 |||| | |||| | || | || || || |||| || | ||||| | ||| || Sbjct 487082 TGTAGAGCATGAAGGGGTTACCAGTTTCGGTCTGGGCTTCCAGGATGGAATACCACAGCT 487023 Query 66193 ----AGCGCGT---GCCTTC--ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTC 66243 ||| || | ||| ||| |||| |||| |||| ||||| | || Sbjct 487022 TCTGAGCACGGATGGTCTTGCGACC--ACGT----CCCT-CCTTC----TCGTACTTCTC 486974 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGA 66301 || || ||||| | | | ||||| || | || | || || | || || Sbjct 486973 ATACAGAGCCTCGAAT--TCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGG 486916 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||| |||| ||| || | || || ||||| ||| || ||||| || |||||| Sbjct 486915 CACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAG 486856 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 || || ||| | ||||| || || ||| || ||||||| || ||||| | || Sbjct 486855 AGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCA 486796 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 ||||| ||||||| |||||| ||||| || || ||||||||||| || | || ||| Sbjct 486795 AGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGC 486736 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||| ||||| |||||||| || | || ||||||||||| || | ||| || | Sbjct 486735 TTGTTACCACCCTGGTCGACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATA 486676 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA 66601 | ||||| || | || |||||||| | ||| || || || || || ||| Sbjct 486675 ATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGG 486616 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATCGGC-CACTGTCC 66659 || |||| || |||||||| ||| |||| || || ||||| || | | |||| Sbjct 486615 ACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTC- 486557 Query 66660 GGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGG 66719 | || || |||||| || |||| ||| | | | ||||||| || |||| Sbjct 486556 -ATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGG 486498 Query 66720 GTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACA 66779 | || || | || ||| |||||||| | || || || ||| | | || ||||| Sbjct 486497 CCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACA 486438 Query 66780 TGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 || ||||| ||||| | |||| ||||||| Sbjct 486437 TGAGGTTGTATGTCTCCAGGACACGCTCAATGT 486405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567045464080