Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq641 210 7e-52 seq486 201 3e-49 seq2205 84.2 7e-14 >seq641 Length=230 Score = 210 bits (232), Expect = 7e-52 Identities = 125/131 (95%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 99 TACGGCCGCAAGCCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 158 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 218 Query 121 TAGAGATAGAG 131 ||||||||||| Sbjct 219 TAGAGATAGAG 229 >seq486 Length=262 Score = 201 bits (222), Expect = 3e-49 Identities = 194/248 (78%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 250 GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAA 309 |||||| |||| | ||| ||||| | ||| |||||||||||||||| |||||||| Sbjct 262 GTTGGGGACTCAGTGGAGACCGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAG 203 Query 310 TCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAG 369 ||||||||||||||||| ||||| ||| | ||||||||||| |||| || | | Sbjct 202 TCATCATGCCCCTTATGTCCAGGGCTTCACGCATGCTACAATGGCTGGTACAGAGAGTGG 143 Query 370 CGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCA 429 ||| | | |||| ||| |||| | |||| | ||||||||||||||| ||||||| Sbjct 142 CGAGCCTGTGAGGGTGAGCGAATCTCGGAAAGCCGGTCTCAGTTCGGATTGGGGTCTGCA 83 Query 430 ACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTGAATA 488 ||||||| |||||| ||| ||||||||||||| |||||||| | ||| ||||||||| Sbjct 82 ACTCGACCTCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATA 23 Query 489 CGTTCCCG 496 |||||||| Sbjct 22 CGTTCCCG 15 >seq2205 Length=24276 Score = 84.2 bits (92), Expect = 7e-14 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| |||||||| || || | ||||||| | |||||| ||| | || |||||| | Sbjct 4134 CAAGTCATCATGGCCAAAATATTGTGGGCTATAGACGTGCCACATTTTTCATTACAAAAG 4193 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | | | | | || |||| ||||| |||| ||| | | | ||||||||||| Sbjct 4194 GATGTTATATTGTGAAAATAAGCTAATCCT-TAAATTTGATT--AATATGGATTGTAGTC 4250 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGA 485 || |||||||||| ||||| ||||| ||||||||||| |||| || | ||||||| Sbjct 4251 TGTAACTCGACTACATGAATAAGGAATTACTAGTAATCGTTAATCATCACGTAACGGTGA 4310 Query 486 ATACGTT 492 || |||| Sbjct 4311 AT-CGTT 4316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503950593600