Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq934 210 5e-52 >seq934 Length=478 Score = 210 bits (232), Expect = 5e-52 Identities = 283/378 (75%), Gaps = 17/378 (4%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| |||| || || | |||||||| | ||| ||||||| |||||| | Sbjct 97 CCTATCCACAACTCATCCC-CTC-CATTTTCAACTGAAGTGGGTTCGGACCTCCACGACG 154 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| | ||| || |||| |||| ||||||||| | | | || |||||||| | Sbjct 155 TC-TTACCGACGCTT-CATCCTGGCCAT-GGATAGATCACACCGCTT-CGGGTCTAGAAC 210 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATT-CGGTTAA 182 | |||||| ||||||| | |||||||||| ||||||| |||||| | ||| | | Sbjct 211 AC-GCGACTC-ACGCCCTTATCGGACTCGCTTT-CGCTACGACTCCCCCACCACGGGTTA 267 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | ||||| | | ||| |||| | | |||| | ||||||| |||| ||||| || Sbjct 268 ACCTCGCCACGCATCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCATCACCACAC 327 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | ||||| || ||||| | || ||||||||||| || ||||||||||||| || Sbjct 328 A-----GGCTCTGACGGCTTGCATGCGACCGGTTTCAGGAACTCTTTCACTCCCCTC-CC 381 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||| |||||| || |||||||||||||||| ||| |||||||||| ||| ||||||| Sbjct 382 GGGGTACTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 441 Query 362 AGCCTTGGAGGATGGTCC 379 ||||||| | | |||||| Sbjct 442 AGCCTTGCAAGGTGGTCC 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241559213440