Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1055 221 1e-52 seq2158 134 1e-26 >seq1055 Length=3912 Score = 221 bits (244), Expect = 1e-52 Identities = 425/627 (68%), Gaps = 0/627 (0%) Strand=Plus/Minus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 |||||| |||| || ||| || || ||| || | |||||| |||| ||||| |||| Sbjct 2117 CCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAA 2058 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 |||||| || || || || || | || || || ||||| | ||| ||||||||||| Sbjct 2057 GAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAA 1998 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 || || ||||||||||| ||||||||||| || || | || ||| ||| ||| || Sbjct 1997 GACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCC 1938 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||| || | ||| |||||||| ||||| | ||| ||||| | ||||| || Sbjct 1937 CTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGA 1878 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 ||| ||||| || | ||| |||||| || || ||| ||| || || || || Sbjct 1877 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCC 1818 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTC 66672 ||||| ||||| ||||| ||||| |||||| || ||| | | || || || Sbjct 1817 GATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 1758 Query 66673 AATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGC 66732 || ||| |||| ||| | |||| |||| ||| | ||| || | || || | Sbjct 1757 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 1698 Query 66733 GGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGT 66792 ||| |||||||||||| | || || || ||||| | | |||||| |||||| || Sbjct 1697 GGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGT 1638 Query 66793 CTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTA 66852 || || || |||| || ||||| || || |||| ||| |||||| | | | Sbjct 1637 TTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATG 1578 Query 66853 TTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTT 66912 || ||||||||| | | | | ||| | | | | ||| || | ||| || ||||| Sbjct 1577 CTGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTT 1518 Query 66913 GATACCAAAGTACGAGTAATTGAAATC 66939 || || |||||| ||| || || || Sbjct 1517 GAAGCCGAAGTACTGGTAGTTAAAGTC 1491 Score = 118 bits (130), Expect = 8e-22 Identities = 315/468 (67%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| ||||| | | || || ||| |||| | |||||||||||||||||| Sbjct 3398 TCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATGCCGGTC 3339 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCAT--CGATGATAATTTTGCATAATTCGGC 65194 ||||| || ||| ||| | ||| ||||| | |||| ||| ||| ||||| Sbjct 3338 TTGAGACCGAGC-TTCCAGCCGGCGAAGTGCATACTGGTGAT-CTTTCCCAT-GGTCGGC 3282 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || || | ||| ||| ||| |||||| | || ||||| || ||| Sbjct 3281 TCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGCGGCC 3222 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTC 65313 || | || ||| |||| || || ||||| |||||||||||||| || | | || Sbjct 3221 ATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTG-ATATC 3163 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGC 65371 ||| || | |||| |||| ||||||| ||| || || || || || | Sbjct 3162 TGCTGGGATGTTAGGGATGTTTTGGATGGAACCAC--CGTCAGCGATGATACGGTTCTTC 3105 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGAC-GATTGATGAC 65430 || || ||||||| || | |||| || | || | ||| || | |||| ||| Sbjct 3104 ATATTGTCGGACCACAGGCCGAGGTCGACTAGGTCTTTGA-GAAGCCACGGGTTGACGAC 3046 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||||||| | |||||||| || ||||||||||| ||| ||||||||| | Sbjct 3045 TTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGTTGGAGGTGTAAGGTTCAAAGCA 2986 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGC 65538 || || ||| ||||| || || |||||||||||||| || Sbjct 2985 CTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATGGGCGC 2938 >seq2158 Length=8959 Score = 134 bits (148), Expect = 1e-26 Identities = 296/436 (68%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | ||||||||| | || ||||| || || || ||| | ||||| ||| | Sbjct 2262 GCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCTGGCTA 2203 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || |||||||| || |||||| ||| || | || || || ||||| Sbjct 2202 AAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCGTGACGAA 2143 Query 61618 GGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC-GT 61675 ||| | || ||||||||| || || || ||| | | || | |||| || | Sbjct 2142 GGCCTACACACTGATTTTGCCTGCCTT-CTGTTCTCTCACC-TCAACT--ATCGCCCTGA 2087 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 | | || || | | || | ||| || || || ||||| ||||| || |||| Sbjct 2086 CCCCAGTGCC-GTCGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCCTGA 2028 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 |||| || | ||| | || ||||||||||| | || |||| ||||| |||| Sbjct 2027 CTGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTAAGCTCATGTGTCAGTACATTG 1968 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | || || ||||| | || | || | | | |||| ||| | |||| || || | | Sbjct 1967 AGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAATAAGAAGTTCTACAACACAACCA 1908 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||| || || || ||||||| || || || | ||||||||| || || |||||||| | Sbjct 1907 ACCCCTTCGACTTTATGGACAATATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGC 1848 Query 61916 GTGTAGGCGACTATCA 61931 |||| || || || || Sbjct 1847 GTGTTGGAGATTACCA 1832 Score = 120 bits (132), Expect = 2e-22 Identities = 204/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| |||||||| |||||||| | || ||| ||||| | Sbjct 2733 ATCTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATCGATCTC 2674 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || || | |||||| | | | | || || ||||| | ||||| Sbjct 2673 TCCAAGGATATTCACGACTGGAACAACAGGCTCAATGA-CGATGAACGATTCTTCATCTC 2615 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| ||||| ||||| ||||| || || || ||||| || ||||| | | || || Sbjct 2614 CCATGTCTTGGCTTTCTTCGCCGCCTCCGATGGCATCGTTAACGAGAACCTCCTTGAGCG 2555 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| | || || || || |||| || || || ||||| ||||||||||| || Sbjct 2554 TTTCAGCAACGAAGTCCAGGTACCGGAAGCCCGGTGCTTCTATGGCTTCCAGATCATGAT 2495 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||| || | ||||| || | ||| | | |||||||| || || || | ||| Sbjct 2494 GGAAAACATTCACTCCGAAACATACTCTCTCCTCATCGACACATATATTAAGGA 2441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552082992400