Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq45 125 2e-24 >seq45 Length=250 Score = 125 bits (138), Expect = 2e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 9315 CGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCCAGGCGCACGACGTGGA 9374 ||| ||||||||||| ||| ||| |||||| |||||||| || ||||| | |||||||| Sbjct 14 CGATTTGGACCCGGCACCGACACAAGTCGAGCGCGTCACCTGCGAGGCGGATGACGTGGA 73 Query 9375 AGGGATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCGGCGGTCTTGAACCCGG 9434 | | |||| ||||| || | |||||||| || || || || |||||||| |||| Sbjct 74 TGCGGTCCACGACCGTCGTGGCCTTGGGGATCTCTTCGGCCGCAGCCGTCTTGAAGCCGG 133 Query 9435 TGAAGCCGTCCATCGCGACCACCTCGACCGCGTCACG-GAAGGCGTCGTCGCGGTCGGCG 9493 ||| |||||||||||||| | || ||||||| ||| | | || |||| Sbjct 134 CGAAACCGTCCATCGCGACGATTCAGATGCCGTCACGCCAAGTCTGGGATTGGGCCGGC- 192 Query 9494 AGCCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGC 9541 |||||||||||||| || ||| | || | |||||||| ||||| Sbjct 193 AGCCAGGTCTTGAAGACCTATTTCAAACGCTCTTCGACCATCGCCAGC 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126721456482340