Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq96 188 6e-43 seq109 143 2e-29 >seq96 Length=72333 Score = 188 bits (208), Expect = 6e-43 Identities = 420/628 (67%), Gaps = 2/628 (0%) Strand=Plus/Minus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 |||||| |||| || ||| || || ||| || | |||||| |||| | ||| |||| Sbjct 48641 CCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAA 48582 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 ||||| || || || || || | || || || ||||| | ||| ||||||||||| Sbjct 48581 TAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAA 48522 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||| || || |||||||| ||||||||||| || || | || ||| ||| |||||| Sbjct 48521 GATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACC 48462 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||| || | || |||||||| ||||| | ||| || |||| ||||| || Sbjct 48461 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 48402 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 ||| ||||| || | ||| |||||| || || ||| ||| || || ||||| Sbjct 48401 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 48342 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTC 66672 || || || || ||||| || || |||||| || ||| | | || || || Sbjct 48341 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 48282 Query 66673 AATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGC 66732 || ||| |||| ||| | |||| |||| ||| | ||| || | || || | Sbjct 48281 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 48222 Query 66733 GGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGT 66792 ||| |||||| ||||| | || || || ||||| | | |||||| |||||| || Sbjct 48221 GGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGT 48162 Query 66793 CTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTA 66852 || || || |||| || || || || || |||| ||| |||||| | | | Sbjct 48161 TTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATG 48102 Query 66853 TTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCT 66911 || |||||||| | || || || ||| | | | | ||| || | ||| || |||| Sbjct 48101 CTGTGGCCGTTC-AGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCT 48043 Query 66912 TGATACCAAAGTACGAGTAATTGAAATC 66939 ||| || || ||| ||| || || || Sbjct 48042 TGAAGCCGAAATACTGGTAGTTAAAGTC 48015 >seq109 Length=59048 Score = 143 bits (158), Expect = 2e-29 Identities = 298/436 (68%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | ||||||||| | || ||||| || || || ||| | ||||| ||| || Sbjct 41549 GCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCTGGCTG 41608 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || |||||||| || |||||| ||| || | || || || ||||| Sbjct 41609 AAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTGACGAA 41668 Query 61618 GGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC-GT 61675 ||| | || ||||||||| || || || ||| | | || | ||||||| | Sbjct 41669 GGCCTACACACTGATTTTGCCTGCCTT-CTGTTCTCTCACC-TCAACT--ATCGTCCTGA 41724 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 | | || ||| | | || | ||| || || || ||||| ||||| || ||| Sbjct 41725 CCCCAGTGC-TGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTGA 41783 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | || || | ||| | || ||||||||||| | || |||| ||||| |||| Sbjct 41784 CCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTAAGCTCATGTGCCAGTACATTG 41843 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | || || ||||| | || | || | | | |||| ||| | |||| || || | | Sbjct 41844 AGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCACCA 41903 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||| || || |||||||||| || || || | ||||||||| || || |||||||| | Sbjct 41904 ACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAAGACCAACTTCTTCGAGAAGC 41963 Query 61916 GTGTAGGCGACTATCA 61931 |||| || || || || Sbjct 41964 GTGTTGGAGATTACCA 41979 Score = 116 bits (128), Expect = 3e-21 Identities = 203/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || |||||||| |||||||| | || ||| | || | Sbjct 41078 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41137 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || || || | |||||| | | | | || || ||||| | ||||| Sbjct 41138 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGA-CGATGAACGATTCTTCATCTC 41196 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || ||||| ||||| ||||| || || || ||||| || ||||| | | ||||| Sbjct 41197 CCACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACG 41256 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| | || || || || |||| || || || ||||| ||||||||||| || Sbjct 41257 TTTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGAT 41316 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| | ||||| || | ||| | | |||||||| || || |||| ||| Sbjct 41317 GGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 41370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566158763200