Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F001651445.1_202016-05-19] 19 sequences; 22,301,977 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14 188 6e-43 seq19 143 2e-29 >seq14 Length=2198313 Score = 188 bits (208), Expect = 6e-43 Identities = 420/628 (67%), Gaps = 2/628 (0%) Strand=Plus/Plus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 |||||| |||| || ||| || || ||| || | |||||| |||| | ||| |||| Sbjct 1895001 CCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAA 1895060 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 ||||| || || || || || | || || || ||||| | ||| ||||||||||| Sbjct 1895061 TAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAA 1895120 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||| || || |||||||| ||||||||||| || || | || ||| ||| |||||| Sbjct 1895121 GATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACC 1895180 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||| || | || |||||||| ||||| | ||| || |||| ||||| || Sbjct 1895181 CTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGA 1895240 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 ||| ||||| || | ||| |||||| || || ||| ||| || || ||||| Sbjct 1895241 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACC 1895300 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTC 66672 || || || || ||||| || || |||||| || ||| | | || || || Sbjct 1895301 GATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 1895360 Query 66673 AATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGC 66732 || ||| |||| ||| | |||| |||| ||| | ||| || | || || | Sbjct 1895361 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 1895420 Query 66733 GGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGT 66792 ||| |||||| ||||| | || || || ||||| | | |||||| |||||| || Sbjct 1895421 GGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGT 1895480 Query 66793 CTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTA 66852 || || || |||| || || || || || |||| ||| |||||| | | | Sbjct 1895481 TTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATG 1895540 Query 66853 TTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCT 66911 || |||||||| | || || || ||| | | | | ||| || | ||| || |||| Sbjct 1895541 CTGTGGCCGTTC-AGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCT 1895599 Query 66912 TGATACCAAAGTACGAGTAATTGAAATC 66939 ||| || || ||| ||| || || || Sbjct 1895600 TGAAGCCGAAATACTGGTAGTTAAAGTC 1895627 >seq19 Length=1505300 Score = 143 bits (158), Expect = 2e-29 Identities = 298/436 (68%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | ||||||||| | || ||||| || || || ||| | ||||| ||| || Sbjct 41813 GCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCTGGCTG 41872 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || |||||||| || |||||| ||| || | || || || ||||| Sbjct 41873 AAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTGACGAA 41932 Query 61618 GGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC-GT 61675 ||| | || ||||||||| || || || ||| | | || | ||||||| | Sbjct 41933 GGCCTACACACTGATTTTGCCTGCCTT-CTGTTCTCTCACC-TCAACT--ATCGTCCTGA 41988 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 | | || ||| | | || | ||| || || || ||||| ||||| || ||| Sbjct 41989 CCCCAGTGC-TGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTGA 42047 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | || || | ||| | || ||||||||||| | || |||| ||||| |||| Sbjct 42048 CCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTAAGCTCATGTGCCAGTACATTG 42107 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | || || ||||| | || | || | | | |||| ||| | |||| || || | | Sbjct 42108 AGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCACCA 42167 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||| || || |||||||||| || || || | ||||||||| || || |||||||| | Sbjct 42168 ACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAAGACCAACTTCTTCGAGAAGC 42227 Query 61916 GTGTAGGCGACTATCA 61931 |||| || || || || Sbjct 42228 GTGTTGGAGATTACCA 42243 Score = 116 bits (128), Expect = 3e-21 Identities = 203/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || |||||||| |||||||| | || ||| | || | Sbjct 41342 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41401 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || || || | |||||| | | | | || || ||||| | ||||| Sbjct 41402 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGA-CGATGAACGATTCTTCATCTC 41460 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || ||||| ||||| ||||| || || || ||||| || ||||| | | ||||| Sbjct 41461 CCACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACG 41520 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| | || || || || |||| || || || ||||| ||||||||||| || Sbjct 41521 TTTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGAT 41580 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| | ||||| || | ||| | | |||||||| || || |||| ||| Sbjct 41581 GGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 41634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567907938160