Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq17 248 3e-63 seq145 116 1e-23 seq73 77.0 1e-11 >seq17 Length=439 Score = 248 bits (274), Expect = 3e-63 Identities = 160/175 (91%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||||| ||| | ||| | | |||||||||||||||||| Sbjct 175 CTCCCACTTATGCTACACCTCTCATGTCTCCTTACAGTGCCAGACTAGAGTCAAGCTCAA 116 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 115 CAGGGTCTTCTTTCCCCGCTGATTCTCCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 56 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 || |||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 55 ATCGTAGGTAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 1 Score = 100 bits (110), Expect = 9e-19 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||| |||||||| ||||||||| |||||||||| ||||| Sbjct 439 CTTAGGACACCTGCGTTATTCTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGA 380 Query 107 CAATGTCATCAACCCGGATC 126 || |||| || | ||||||| Sbjct 379 CAGTGTCCTCGAACCGGATC 360 >seq145 Length=214 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 107 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 166 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 167 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 213 >seq73 Length=292 Score = 77.0 bits (84), Expect = 1e-11 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635195732128