Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq84 161 3e-37 seq183 140 1e-30 >seq84 Length=240715 Score = 161 bits (178), Expect = 3e-37 Identities = 131/156 (84%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||| |||||||||||||||||||| | ||||||||| || ||||||| || ||||||| Sbjct 55122 TTGGGTTTTTATCTAATAAATACACTCTTTCCGAAGTTGG--TTTTTAGTATATATTAGC 55179 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 | || ||||||| || ||| ||||| || ||||||||||||||||||||||||| Sbjct 55180 CCCTGACTTACCAC----ATGTATGCAGTAATGTGCTATCAAATAAACGATAACTGATTT 55235 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT 451 |||||| ||||||||||||||| || ||| |||||| Sbjct 55236 AATGAGTCATTCGCAGTTTCACCGTCTAG-TTGCTT 55270 >seq183 Length=200 Score = 140 bits (154), Expect = 1e-30 Identities = 127/159 (80%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||||||||||||||| |||| |||||||| ||| || ||| || ||| Sbjct 43 GCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACTGAGTGAGATCTAAGGAAC 102 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 | ||||||| || |||||||||||| || || | || | | |||| ||||| |||| Sbjct 103 CACAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCTTGCACTTAAACAT 161 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 |||||||||| |||||||||||||||||| ||||||||| Sbjct 162 GCATGGCTTAGTCTTTGAGACAAGCATATAACTACTGGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510396057856