Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3 277 3e-72 >seq3 Length=5817774 Score = 277 bits (306), Expect = 3e-72 Identities = 201/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 3990690 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 3990747 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 3990748 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 3990807 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||||| | |||||||| | ||||||||||||||||||| Sbjct 3990808 ACCCAGACCTTCCGGCCAAGGGAGTGTACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 3990867 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3990868 GCCCAGAGCATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3990916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999949005