Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3 713 0.0 seq1 95.1 5e-17 >seq3 Length=5817774 Score = 713 bits (790), Expect = 0.0 Identities = 461/501 (92%), Gaps = 3/501 (1%) Strand=Plus/Minus Query 5 TGACCGGTGGCCTAGCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAG 63 ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3989804 TGACCGGCGACCTAGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAG 3989745 Query 64 CTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCAC 123 ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 3989744 CTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCAC 3989685 Query 124 AAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3989684 AAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAAT 3989625 Query 184 TGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTC-GG 242 ||||||||||||||||||||| ||||||||||| ||| | || ||| ||| ||| || || Sbjct 3989624 TGTTGAAAGGGAAGCGCTTGCGACCAGACTTGCTCGCGGGTGATCAGCCG-CCCTTCTGG 3989566 Query 243 CCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGG 302 |||||||||| | ||| ||||||||||||| | | ||||||||||||||||||||||| Sbjct 3989565 GCGGTGCACTCGCCCGCGATCAGGCCAGCATCGGTTTGGGCGGTCGGATAAAGGCCCCGG 3989506 Query 303 GAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTG 362 |||||| || |||| ||||| ||||||||||| |||||| |||| |||| |||||||| | Sbjct 3989505 GAATGTAGCTCCCTCCGGGGAGTGTTATAGCCTGGGGTGCAATGTGGCCAGCCTGGACCG 3989446 Query 363 AGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 3989445 AGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACAC 3989386 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 3989385 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATGCGCGCAATGAA 3989326 Query 483 AGTGAACGGAGGTGGGAACCC 503 ||||||||||||||||||||| Sbjct 3989325 AGTGAACGGAGGTGGGAACCC 3989305 Score = 693 bits (768), Expect = 0.0 Identities = 446/483 (92%), Gaps = 3/483 (1%) Strand=Plus/Minus Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTC-GGCCGGTGCACTCTTCTGCGG 261 || ||||||||||| ||| | || ||| ||| ||| || || |||||||||| | ||| Sbjct 3989296 GCGACCAGACTTGCTCGCGGGTGATCAGCCG-CCCTTCTGGGCGGTGCACTCGCCCGCGA 3989238 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 ||||||||||||| | | ||||||||||||||||||||||||||||| || |||| |||| Sbjct 3989237 TCAGGCCAGCATCGGTTTGGGCGGTCGGATAAAGGCCCCGGGAATGTAGCTCCCTCCGGG 3989178 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | ||||||||||| |||||| |||| |||| |||||||| |||| ||||||| ||||||| Sbjct 3989177 GAGTGTTATAGCCTGGGGTGCAATGTGGCCAGCCTGGACCGAGGACCGCGCTTCGGCTAG 3989118 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 3989117 GATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 3989058 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 3989057 CTATGCGAGTGTTTGGGTGTCAAACCCATGCGCGCAATGAAAGTGAACGGAGGTGGGAAC 3988998 Query 502 CC-GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3988997 CCTCAAAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 3988938 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3988937 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 3988878 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3988877 CTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 3988818 Query 681 CGA 683 ||| Sbjct 3988817 CGA 3988815 >seq1 Length=10671843 Score = 95.1 bits (104), Expect = 5e-17 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 16 CTAGCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGG 74 |||||| ||||||||||||||| |||||| |||||| ||| ||||||||||||||||||| Sbjct 8558300 CTAGCCCGTGTGAAGCTCCTTCAACGAGTTGAGTTGATTGAGAATGCAGCTCTAAATGGG 8558359 Query 75 AGGTAAATTTCTTC 88 ||| |||||| || Sbjct 8558360 TGGTGAATTTCATC 8558373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999849850