Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3 354 1e-95 seq1 95.1 2e-17 >seq3 Length=5817774 Score = 354 bits (392), Expect = 1e-95 Identities = 234/258 (91%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3990834 TACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAGCATCTAAGGGCATCACAG 3990893 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 3990894 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 3990952 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || || | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 3990953 GACCCGCCTGAGCGGGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 3991012 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 3991013 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACATAATCAAGA 3991072 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 3991073 AAGAGCTCTCAATCTGTC 3991090 >seq1 Length=10671843 Score = 95.1 bits (104), Expect = 2e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||||||||| |||||||||||| | |||| |||||||||| ||||| Sbjct 2951939 CTCCACCAACTAAGAACGGCCATACACCACCACCCACATAATCGAGAAAGAGCTCTCAAT 2951880 Query 254 CTGTC 258 ||||| Sbjct 2951879 CTGTC 2951875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799945967