Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 827 0.0 seq1 313 8e-83 >seq3 Length=5817774 Score = 827 bits (916), Expect = 0.0 Identities = 506/537 (94%), Gaps = 3/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3986126 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 3986185 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3986186 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 3986245 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||| |||||||||||| |||| ||| |||| || |||||||||||||||||| Sbjct 3986246 GGCCCGCGAGGGACCTTAACGCTAGAAGTTGGGCGGTAAAACCCAGTTCCGCTTCATTGA 3986305 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||||||||||||||||||||||||| |||||| | |||||||| || Sbjct 3986306 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGGA---GCTCCCACCTA 3986362 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 3986363 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 3986422 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3986423 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 3986482 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3986483 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3986542 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3986543 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTATTTGAATTTCT 3986602 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3986603 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3986659 >seq1 Length=10671843 Score = 313 bits (346), Expect = 8e-83 Identities = 231/269 (86%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 29 TGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCA 88 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 8378100 TGATCTCCATGAGTCCCCCTTAGGACACCTGCGTTAAGGTTTAACAGATGTGCCGCCCTA 8378159 Query 89 GCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACCTTAACGC 148 ||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||| Sbjct 8378160 GCCAAACTCCCCACCTGACAACGTCTTCAACCTGGATCGGCCCGCGAGGGACCTTAACGC 8378219 Query 149 CAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGG 208 |||| ||| |||||| |||||||| | |||||| |||||||| ||| |||||||| Sbjct 8378220 TAGAAGTTGGGAGGTGAAACCCAGTTCCACCCCATTGAATAAGTAAATAAATGATAAGGG 8378279 Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268 |||||||||||||| || | ||| |||| ||| ||||||||||| | | ||| ||| Sbjct 8378280 TAGTGGTATTTCACCGGCACTGAA---GCTCTCACCTATTCTACACCCCCTATGTCTTTT 8378336 Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||| ||| |||||||||||||||||| Sbjct 8378337 CACAGTGTCAAACTAGAGTCAAGCTCAAC 8378365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199885536