Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq3 827 0.0
seq1 313 8e-83
>seq3
Length=5817774
Score = 827 bits (916), Expect = 0.0
Identities = 506/537 (94%), Gaps = 3/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3986126 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 3986185
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3986186 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 3986245
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||| |||||||||||| |||| ||| |||| || ||||||||||||||||||
Sbjct 3986246 GGCCCGCGAGGGACCTTAACGCTAGAAGTTGGGCGGTAAAACCCAGTTCCGCTTCATTGA 3986305
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||
Sbjct 3986306 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGGA---GCTCCCACCTA 3986362
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 3986363 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 3986422
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3986423 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 3986482
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3986483 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3986542
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3986543 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTATTTGAATTTCT 3986602
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3986603 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3986659
>seq1
Length=10671843
Score = 313 bits (346), Expect = 8e-83
Identities = 231/269 (86%), Gaps = 3/269 (1%)
Strand=Plus/Plus
Query 29 TGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCA 88
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 8378100 TGATCTCCATGAGTCCCCCTTAGGACACCTGCGTTAAGGTTTAACAGATGTGCCGCCCTA 8378159
Query 89 GCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACCTTAACGC 148
||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||
Sbjct 8378160 GCCAAACTCCCCACCTGACAACGTCTTCAACCTGGATCGGCCCGCGAGGGACCTTAACGC 8378219
Query 149 CAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGG 208
|||| ||| |||||| |||||||| | |||||| |||||||| ||| ||||||||
Sbjct 8378220 TAGAAGTTGGGAGGTGAAACCCAGTTCCACCCCATTGAATAAGTAAATAAATGATAAGGG 8378279
Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268
|||||||||||||| || | ||| |||| ||| ||||||||||| | | ||| |||
Sbjct 8378280 TAGTGGTATTTCACCGGCACTGAA---GCTCTCACCTATTCTACACCCCCTATGTCTTTT 8378336
Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAAC 297
|||| ||| ||||||||||||||||||
Sbjct 8378337 CACAGTGTCAAACTAGAGTCAAGCTCAAC 8378365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635199885536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |