Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq3 369 6e-100
seq1 82.4 1e-13
>seq3
Length=5817774
Score = 369 bits (408), Expect = 6e-100
Identities = 253/279 (91%), Gaps = 5/279 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 3985802 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 3985745
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3985744 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 3985685
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| || |||| ||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 3985684 GAACGCGGCGATTTTCTCCCGCACATCGTAGTCGGATACGAATAGGCCTCGGCCCTGAAT 3985625
Query 181 CTTAGCAGGCCGGCAACGGGCGTCC-CGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
|||||| |||||||| | |||| || | ||||| | |||||| |||| ||||||||||
Sbjct 3985624 CTTAGCGGGCCGGCAGC-GGCGCCCGGGGGGAAGTCCCGGGCGC-CAGCCGGCGGATTGC 3985567
Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||||||||||| ||||||||||||||||| |||||
Sbjct 3985566 AATTTCACCATGCGCGGGGATAAATCCTTTGCATACGAC 3985528
Score = 361 bits (400), Expect = 9e-98
Identities = 249/275 (91%), Gaps = 5/275 (2%)
Strand=Plus/Minus
Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64
||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 3996679 GAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGTGCCG 3996622
Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAAC 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3996621 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAAC 3996562
Query 125 GGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTA 184
| || |||| ||||| ||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 3996561 GCGGCGATTTTCTCCCGCACATCGTAGTCGGATACGAATAGGCCTCGGCCCTGAATCTTA 3996502
Query 185 GCAGGCCGGCAACGGGCGTCC-CGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATT 243
|| |||||||| | |||| || | ||||| | |||||| |||| ||||||||||||||
Sbjct 3996501 GCGGGCCGGCAGC-GGCGCCCGGGTGGAAGTCCCGGGCGC-CAGCCGGCGGATTGCAATT 3996444
Query 244 TCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||||||| ||||||||||||||||| |||||
Sbjct 3996443 TCACCATGCGCGGGGATAAATCCTTTGCATACGAC 3996409
>seq1
Length=10671843
Score = 82.4 bits (90), Expect = 1e-13
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 219 GGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||||||||||||||||||| |||||||||||| | || ||||||||||| |||||
Sbjct 6115211 GGCGCTCAGCTGGCGGATTGCAACTTCACCATGCGCGGAGACTAATCCTTTGCATACGAC 6115152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199944448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |