Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3 369 6e-100 seq1 82.4 1e-13 >seq3 Length=5817774 Score = 369 bits (408), Expect = 6e-100 Identities = 253/279 (91%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 3985802 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 3985745 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3985744 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 3985685 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| || |||| ||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 3985684 GAACGCGGCGATTTTCTCCCGCACATCGTAGTCGGATACGAATAGGCCTCGGCCCTGAAT 3985625 Query 181 CTTAGCAGGCCGGCAACGGGCGTCC-CGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||| |||||||| | |||| || | ||||| | |||||| |||| |||||||||| Sbjct 3985624 CTTAGCGGGCCGGCAGC-GGCGCCCGGGGGGAAGTCCCGGGCGC-CAGCCGGCGGATTGC 3985567 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||||||||||| ||||||||||||||||| ||||| Sbjct 3985566 AATTTCACCATGCGCGGGGATAAATCCTTTGCATACGAC 3985528 Score = 361 bits (400), Expect = 9e-98 Identities = 249/275 (91%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 ||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 3996679 GAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGTGCCG 3996622 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAAC 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3996621 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAAC 3996562 Query 125 GGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTA 184 | || |||| ||||| ||||||||||||||||||||||||||| ||||||| ||| |||| Sbjct 3996561 GCGGCGATTTTCTCCCGCACATCGTAGTCGGATACGAATAGGCCTCGGCCCTGAATCTTA 3996502 Query 185 GCAGGCCGGCAACGGGCGTCC-CGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATT 243 || |||||||| | |||| || | ||||| | |||||| |||| |||||||||||||| Sbjct 3996501 GCGGGCCGGCAGC-GGCGCCCGGGTGGAAGTCCCGGGCGC-CAGCCGGCGGATTGCAATT 3996444 Query 244 TCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||||||| ||||||||||||||||| ||||| Sbjct 3996443 TCACCATGCGCGGGGATAAATCCTTTGCATACGAC 3996409 >seq1 Length=10671843 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 219 GGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||||||||||||||||||| |||||||||||| | || ||||||||||| ||||| Sbjct 6115211 GGCGCTCAGCTGGCGGATTGCAACTTCACCATGCGCGGAGACTAATCCTTTGCATACGAC 6115152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199944448