Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 179 3e-40 seq1 138 9e-28 >seq3 Length=5817774 Score = 179 bits (198), Expect = 3e-40 Identities = 435/659 (66%), Gaps = 0/659 (0%) Strand=Plus/Plus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || || | ||||| ||| || ||| || || ||||| ||| || ||||| || || Sbjct 3751562 GGGCAAAACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTC 3751621 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || || ||||||| || || || || ||||| |||||||||| ||||||||| Sbjct 3751622 CAAAGAGCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAG 3751681 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || | |||||| |||| ||||| ||||| || || ||||||| |||||||| || Sbjct 3751682 TCCAAGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGC 3751741 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| || ||||||||||| || | ||| || |||||||| || | ||| || Sbjct 3751742 CGCTTGTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGC 3751801 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| |||||| || ||||| |||||| | ||| || || || | ||| Sbjct 3751802 ACGATCCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGA 3751861 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658 || || ||||| || || || || ||||||||||| || ||||| || || Sbjct 3751862 TGTACGTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTA 3751921 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | || || |||||| ||| | || ||| | |||| | || || | || Sbjct 3751922 TCGTAAATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGC 3751981 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 |||| || || | || |||||| || || | ||||| || ||||| | | ||| Sbjct 3751982 GGTTGCGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGAC 3752041 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838 ||| || || ||||||| ||| ||||| | ||||| ||| || | ||| Sbjct 3752042 ATGAGGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACA 3752101 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898 ||||| | | || |||||| | || | | | | || | | | | || || || Sbjct 3752102 CGCATTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGAC 3752161 Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 || || |||||||||| ||||||||| || ||||| || | | | |||||||| Sbjct 3752162 CGCTCGAGGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGC 3752220 Score = 125 bits (138), Expect = 6e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 ||| || || || || || | ||||| || |||| ||| || || || ||||||||||| Sbjct 3751209 GGGGAGTGCTAGCGAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGAC 3751268 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 |||||||||||| ||||| || ||| || ||||| | ||||| ||| || |||||||| Sbjct 3751269 AATTTCGGTGCAGAGATTCGAGCTGCGAATTGTGCCGAGATTCTTTTGGTTGCTCTTGCG 3751328 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || || || || ||||||| |||| | || |||||||||| Sbjct 3751329 GTTACACGCGTCTTTGTACAGCATGAAGGGGTTGCCGGTCTC 3751370 Score = 114 bits (126), Expect = 1e-20 Identities = 304/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 65105 GCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCC-AGCACGCCAAGCATAGAA 65163 || ||| |||| | || |||||||| || |||||||| || ||| ||| || || Sbjct 3750331 GCGGCCATGGTTCGGAGGTAGTACATCCCAGTCTTGAGACCCAGCTT-CCAGCCAGCAAA 3750389 Query 65164 ATGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGAC 65222 ||||| | || | || |||| | | |||| || | || ||||||| || ||| Sbjct 3750390 GTGCAT-GCTGGTGATCTTGCCCATTGTCGGGTCTTTTAGGTGGATATTCAGAGATTGAG 3750448 Query 65223 TCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCT 65282 |||||||||| || ||| || || |||||||| | | |||| || || |||| Sbjct 3750449 ACTGATCGATGAAAGCACCGCGGTCGGCAGCCATCTGCACGATAGTTCGCTGTGAAATCT 3750508 Query 65283 CCCAGACGGTCTTGTACAG-GCGACG-TACCTCAATTGGAATCTCCTCAATGTCCTGGAC 65340 |||| || |||||||| | || | || || | || || | ||| | ||| | Sbjct 3750509 CCCAAACTGTCTTGTATAAAGCCTTGATATCTGCA--GGTATATTGGGAATATTCTGAAT 3750566 Query 65341 TGAACCAC-GACGTGCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGA 65399 |||||||| | || |||||||| || || ||| || ||||| | ||||| ||| | Sbjct 3750567 TGAACCACCGTCG-GCAATAATACGGTTCTTCATGTTGTCGGACCAAAGACCCATATCAA 3750625 Query 65400 TAAGATGTTGAA----CCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGA 65455 | | || | ||||| | |||| ||||||||||| || | |||||||||| Sbjct 3750626 CCAAGTCTTTCAGTAGCCAAGGG----TTGACAACTTGGAACTCTCCTGCCAGTACACGA 3750681 Query 65456 CGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCA 65515 || ||| |||||||| ||| ||| || ||| ||||| || || || ||||| Sbjct 3750682 CGCGAATAAATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGAACCCAAGGATTTGACTT 3750741 Query 65516 GTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 ||| ||||| |||||||| ||||| | ||| Sbjct 3750742 GTACTGGCAGTCGGCATGGGCGCGACAAGCAA 3750773 >seq1 Length=10671843 Score = 138 bits (152), Expect = 9e-28 Identities = 572/902 (63%), Gaps = 64/902 (7%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| ||||| || |||||||| | ||| ||| |||| | Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714 Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| || | || ||| | | | ||| || |||| | |||||| Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGA-CGACGAACGCTACTTCATTTC 3822773 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || || ||||| || || || ||||||||||| ||||| || | || || Sbjct 3822774 CCACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAGCG 3822833 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || || ||| | | ||||| || || |||||||| |||||||| || Sbjct 3822834 CTTCAGTGGCGAAGTTCAAATACCTGAGGCACGATGCTTCTACGGTTTCCAGATCATGAT 3822893 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| ||| |||||||||| || || |||| ||||| | Sbjct 3822894 GGAGAACATCCACTCCGAGACTTACTCCCTTCTCATCGACACATATATCAAGGAGCAGAA 3822953 Query 61383 GGAACGTGAACG-AT-TGTTCAATGCCATCGA--------------GACGATAC----CG 61422 | ||| ||||| || | || |||| ||||| ||| ||| || Sbjct 3822954 GCAAC--GAACGTATCTCTTTGATGCTATCGACACAAGTAAGTCTCGACATTACGTCACG 3823011 Query 61423 G--------------------CGG--------TGAAGC----GGAAAGCGGATTGGGCCT 61450 | ||| || | | |||||| || ||||| Sbjct 3823012 GTTTGCATCTATCTGACGTGCCGGTAGTTCCTTGTATCCGCAAGAAAGCCGACTGGGCTA 3823071 Query 61451 TCAATTGGATCACCAG-TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 |||| |||||| | || || | |||| |||| | |||| | | || || || | Sbjct 3823072 TCAAATGGATC-CAAGATAAGAACTCTACCTTTGCTCAACGCCTTGTTGCCTTCGCTGCT 3823130 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || || || || || || || | ||||| ||| | ||||| || || Sbjct 3823131 GTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTTAAGAAGCGCGGT 3823190 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 |||||||| |||||||||||| || || | || || ||||||||||| | ||| | Sbjct 3823191 CTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAGGGTCTTCATACT 3823250 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 || || || | || ||| | |||| || || || || || ||| Sbjct 3823251 GACTTCGCCTGCCTCCTCTTCTCTC---ATCTCAACAACCGACCAAGCAAGCAGGCTGTT 3823307 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 || | || |||||| || || ||||| || || || |||| || ||| | || Sbjct 3823308 CAAGATGTCATTACTGAGGCCGTCACCATCGAGCAAGAGTTCTTGACAGAGGCTCTACCT 3823367 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | || | || ||||| || || ||| ||| || || ||||| || || || Sbjct 3823368 TGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCAATACATCGAATTCGTGGCAGAT 3823427 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 ||||| | | | | | |||| || | ||| || ||| ||| ||||| || ||| Sbjct 3823428 CGTCTACTCCTAGCTCTCGGTAACCAGAAGTACTACAACGCGACAAATCCATTCGACTTC 3823487 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| ||| || ||| |||||||| || || |||||||| || || || ||||| Sbjct 3823488 ATGGAGTCGATATCATTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGACTAC 3823547 Query 61930 CA 61931 || Sbjct 3823548 CA 3823549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567966082480