Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq3 179 3e-40
seq1 138 9e-28
>seq3
Length=5817774
Score = 179 bits (198), Expect = 3e-40
Identities = 435/659 (66%), Gaps = 0/659 (0%)
Strand=Plus/Plus
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|| || | ||||| ||| || ||| || || ||||| ||| || ||||| || ||
Sbjct 3751562 GGGCAAAACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTC 3751621
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| || || ||||||| || || || || ||||| |||||||||| |||||||||
Sbjct 3751622 CAAAGAGCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAG 3751681
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
|| | |||||| |||| ||||| ||||| || || ||||||| |||||||| ||
Sbjct 3751682 TCCAAGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGC 3751741
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| ||| || ||||||||||| || | ||| || |||||||| || | ||| ||
Sbjct 3751742 CGCTTGTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGC 3751801
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
|||| |||||| || ||||| |||||| | ||| || || || | |||
Sbjct 3751802 ACGATCCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGA 3751861
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658
|| || ||||| || || || || ||||||||||| || ||||| || ||
Sbjct 3751862 TGTACGTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTA 3751921
Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718
| | || || |||||| ||| | || ||| | |||| | || || | ||
Sbjct 3751922 TCGTAAATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGC 3751981
Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778
|||| || || | || |||||| || || | ||||| || ||||| | | |||
Sbjct 3751982 GGTTGCGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGAC 3752041
Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838
||| || || ||||||| ||| ||||| | ||||| ||| || | |||
Sbjct 3752042 ATGAGGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACA 3752101
Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898
||||| | | || |||||| | || | | | | || | | | | || || ||
Sbjct 3752102 CGCATTATCATGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGAC 3752161
Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957
|| || |||||||||| ||||||||| || ||||| || | | | ||||||||
Sbjct 3752162 CGCTCGAGGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGC 3752220
Score = 125 bits (138), Expect = 6e-24
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060
||| || || || || || | ||||| || |||| ||| || || || |||||||||||
Sbjct 3751209 GGGGAGTGCTAGCGAAGCCAAATTGCAAACTGCTACCTCATCTGGTGCAGTATACTCGAC 3751268
Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120
|||||||||||| ||||| || ||| || ||||| | ||||| ||| || ||||||||
Sbjct 3751269 AATTTCGGTGCAGAGATTCGAGCTGCGAATTGTGCCGAGATTCTTTTGGTTGCTCTTGCG 3751328
Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162
|| || || || ||||||| |||| | || ||||||||||
Sbjct 3751329 GTTACACGCGTCTTTGTACAGCATGAAGGGGTTGCCGGTCTC 3751370
Score = 114 bits (126), Expect = 1e-20
Identities = 304/452 (67%), Gaps = 18/452 (4%)
Strand=Plus/Plus
Query 65105 GCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCC-AGCACGCCAAGCATAGAA 65163
|| ||| |||| | || |||||||| || |||||||| || ||| ||| || ||
Sbjct 3750331 GCGGCCATGGTTCGGAGGTAGTACATCCCAGTCTTGAGACCCAGCTT-CCAGCCAGCAAA 3750389
Query 65164 ATGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGAC 65222
||||| | || | || |||| | | |||| || | || ||||||| || |||
Sbjct 3750390 GTGCAT-GCTGGTGATCTTGCCCATTGTCGGGTCTTTTAGGTGGATATTCAGAGATTGAG 3750448
Query 65223 TCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCT 65282
|||||||||| || ||| || || |||||||| | | |||| || || ||||
Sbjct 3750449 ACTGATCGATGAAAGCACCGCGGTCGGCAGCCATCTGCACGATAGTTCGCTGTGAAATCT 3750508
Query 65283 CCCAGACGGTCTTGTACAG-GCGACG-TACCTCAATTGGAATCTCCTCAATGTCCTGGAC 65340
|||| || |||||||| | || | || || | || || | ||| | ||| |
Sbjct 3750509 CCCAAACTGTCTTGTATAAAGCCTTGATATCTGCA--GGTATATTGGGAATATTCTGAAT 3750566
Query 65341 TGAACCAC-GACGTGCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGA 65399
|||||||| | || |||||||| || || ||| || ||||| | ||||| ||| |
Sbjct 3750567 TGAACCACCGTCG-GCAATAATACGGTTCTTCATGTTGTCGGACCAAAGACCCATATCAA 3750625
Query 65400 TAAGATGTTGAA----CCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGA 65455
| | || | ||||| | |||| ||||||||||| || | ||||||||||
Sbjct 3750626 CCAAGTCTTTCAGTAGCCAAGGG----TTGACAACTTGGAACTCTCCTGCCAGTACACGA 3750681
Query 65456 CGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCA 65515
|| ||| |||||||| ||| ||| || ||| ||||| || || || |||||
Sbjct 3750682 CGCGAATAAATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGAACCCAAGGATTTGACTT 3750741
Query 65516 GTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
||| ||||| |||||||| ||||| | |||
Sbjct 3750742 GTACTGGCAGTCGGCATGGGCGCGACAAGCAA 3750773
>seq1
Length=10671843
Score = 138 bits (152), Expect = 9e-28
Identities = 572/902 (63%), Gaps = 64/902 (7%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| ||||| || |||||||| | ||| ||| |||| |
Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714
Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202
|| ||||| || | || ||| | | | ||| || |||| | ||||||
Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGA-CGACGAACGCTACTTCATTTC 3822773
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| || | || || ||||| || || || ||||||||||| ||||| || | || ||
Sbjct 3822774 CCACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAGCG 3822833
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| || || ||| | | ||||| || || |||||||| |||||||| ||
Sbjct 3822834 CTTCAGTGGCGAAGTTCAAATACCTGAGGCACGATGCTTCTACGGTTTCCAGATCATGAT 3822893
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
|||||| ||||||| |||| ||| |||||||||| || || |||| ||||| |
Sbjct 3822894 GGAGAACATCCACTCCGAGACTTACTCCCTTCTCATCGACACATATATCAAGGAGCAGAA 3822953
Query 61383 GGAACGTGAACG-AT-TGTTCAATGCCATCGA--------------GACGATAC----CG 61422
| ||| ||||| || | || |||| ||||| ||| ||| ||
Sbjct 3822954 GCAAC--GAACGTATCTCTTTGATGCTATCGACACAAGTAAGTCTCGACATTACGTCACG 3823011
Query 61423 G--------------------CGG--------TGAAGC----GGAAAGCGGATTGGGCCT 61450
| ||| || | | |||||| || |||||
Sbjct 3823012 GTTTGCATCTATCTGACGTGCCGGTAGTTCCTTGTATCCGCAAGAAAGCCGACTGGGCTA 3823071
Query 61451 TCAATTGGATCACCAG-TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509
|||| |||||| | || || | |||| |||| | |||| | | || || || |
Sbjct 3823072 TCAAATGGATC-CAAGATAAGAACTCTACCTTTGCTCAACGCCTTGTTGCCTTCGCTGCT 3823130
Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569
|| |||||| | || || || || || || || | ||||| ||| | ||||| || ||
Sbjct 3823131 GTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTTAAGAAGCGCGGT 3823190
Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629
|||||||| |||||||||||| || || | || || ||||||||||| | ||| |
Sbjct 3823191 CTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAGGGTCTTCATACT 3823250
Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689
|| || || | || ||| | |||| || || || || || |||
Sbjct 3823251 GACTTCGCCTGCCTCCTCTTCTCTC---ATCTCAACAACCGACCAAGCAAGCAGGCTGTT 3823307
Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749
|| | || |||||| || || ||||| || || || |||| || ||| | ||
Sbjct 3823308 CAAGATGTCATTACTGAGGCCGTCACCATCGAGCAAGAGTTCTTGACAGAGGCTCTACCT 3823367
Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809
| | || | || ||||| || || ||| ||| || || ||||| || || ||
Sbjct 3823368 TGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCAATACATCGAATTCGTGGCAGAT 3823427
Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869
||||| | | | | | |||| || | ||| || ||| ||| ||||| || |||
Sbjct 3823428 CGTCTACTCCTAGCTCTCGGTAACCAGAAGTACTACAACGCGACAAATCCATTCGACTTC 3823487
Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929
||||| ||| || ||| |||||||| || || |||||||| || || || |||||
Sbjct 3823488 ATGGAGTCGATATCATTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGACTAC 3823547
Query 61930 CA 61931
||
Sbjct 3823548 CA 3823549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567966082480
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