Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq3059 89.7 7e-16
seq3839 77.0 5e-12
seq480 73.4 5e-11
>seq3059
Length=37941
Score = 89.7 bits (98), Expect = 7e-16
Identities = 72/86 (84%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTT 196
|||||| | |||| ||||||||||||| | |||| |||||||| |||||||| | |||
Sbjct 21067 AGTGGCCCTCCTTATCCCGAAGTTACGTGAGCCAATTTGCCGAGTTCCTTAATGATTGTT 21008
Query 197 CACCCGAACGCCTTAGTATTCTCTAC 222
||| | |||||||| |||||||||||
Sbjct 21007 CACTCAAACGCCTTCGTATTCTCTAC 20982
>seq3839
Length=2328
Score = 77.0 bits (84), Expect = 5e-12
Identities = 68/84 (81%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198
|||| | |||| ||||||||||||| | | ||||||||||| |||||||| | | | |
Sbjct 1474 TGGCTCACCTTATCCCGAAGTTACGTGAGTCATTTTGCCGAGTTCCTTAATGATTGATTA 1415
Query 199 CCCGAACGCCTTAGTATTCTCTAC 222
| | |||||||| |||||||||||
Sbjct 1414 CTCAAACGCCTTCGTATTCTCTAC 1391
>seq480
Length=10311
Score = 73.4 bits (80), Expect = 5e-11
Identities = 69/87 (79%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198
|||| | |||| ||||||||||||| | | || |||||||| |||||||| | | | |
Sbjct 6981 TGGCCCACCTTATCCCGAAGTTACGTGAGTCAATTTGCCGAGTTCCTTAATGATTGATTA 6922
Query 199 CCCGAACGCCTTAGTATTCTCTACCTG 225
| | |||||||| ||||||||||| ||
Sbjct 6921 CTCAAACGCCTTTGTATTCTCTACTTG 6895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694373825243
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |