Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3059 89.7 7e-16 seq3839 77.0 5e-12 seq480 73.4 5e-11 >seq3059 Length=37941 Score = 89.7 bits (98), Expect = 7e-16 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTT 196 |||||| | |||| ||||||||||||| | |||| |||||||| |||||||| | ||| Sbjct 21067 AGTGGCCCTCCTTATCCCGAAGTTACGTGAGCCAATTTGCCGAGTTCCTTAATGATTGTT 21008 Query 197 CACCCGAACGCCTTAGTATTCTCTAC 222 ||| | |||||||| ||||||||||| Sbjct 21007 CACTCAAACGCCTTCGTATTCTCTAC 20982 >seq3839 Length=2328 Score = 77.0 bits (84), Expect = 5e-12 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| ||||||||||||| | | ||||||||||| |||||||| | | | | Sbjct 1474 TGGCTCACCTTATCCCGAAGTTACGTGAGTCATTTTGCCGAGTTCCTTAATGATTGATTA 1415 Query 199 CCCGAACGCCTTAGTATTCTCTAC 222 | | |||||||| ||||||||||| Sbjct 1414 CTCAAACGCCTTCGTATTCTCTAC 1391 >seq480 Length=10311 Score = 73.4 bits (80), Expect = 5e-11 Identities = 69/87 (79%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| ||||||||||||| | | || |||||||| |||||||| | | | | Sbjct 6981 TGGCCCACCTTATCCCGAAGTTACGTGAGTCAATTTGCCGAGTTCCTTAATGATTGATTA 6922 Query 199 CCCGAACGCCTTAGTATTCTCTACCTG 225 | | |||||||| ||||||||||| || Sbjct 6921 CTCAAACGCCTTTGTATTCTCTACTTG 6895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694373825243