Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq387 132 1e-28 seq577 127 5e-27 seq3839 120 8e-25 seq480 116 9e-24 seq3059 114 3e-23 seq1634 111 4e-22 >seq387 Length=6249 Score = 132 bits (146), Expect = 1e-28 Identities = 195/274 (71%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| | ||| ||||||||||||| | | |||||||| Sbjct 5864 TAAACAGTATCTGCACTGTTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGT 5923 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 5924 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 5983 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTA 184 || | || | || |||||||||||| ||||| ||| ||||| | || | || | | Sbjct 5984 CCCTCATAGATAAGGCCGCCGTTTATCGGGGTTTCCATCAAAACCTGACCTTTTAAATCA 6043 Query 185 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 | |||| ||| || || ||| |||||| | |||||| |||||| || | || Sbjct 6044 AGAAAATCAGTTACCCGGTCGACACGGGGCAGACATCACACTCTATACATCGA-ATTAAC 6102 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 || ||||||||||||||||| | |||||||||| Sbjct 6103 CTTCGCAGAGTGCTGTGTTTTAATTAAACAGTCG 6136 >seq577 Length=9315 Score = 127 bits (140), Expect = 5e-27 Identities = 197/278 (71%), Gaps = 9/278 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||| | | ||||||| Sbjct 8053 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGCCAATCATCAAGACAGCTGTTGT 7994 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 7993 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 7934 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || | || |||||||||||| ||||| ||| |||| | | | || || ||| Sbjct 7933 CCCTCATCGGTAAGGCCGCCGTTTATCGGGGTTTCCTTCAA-AACCTGGCCTT--TTAAT 7877 Query 187 CCCA--TCAA----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||| | || ||| || ||| ||| |||||| | |||||| | ||| || | | Sbjct 7876 TCCAAGTAAATTCGTTACCCAGCCGACACAGGGCAGACATCACACTCAATATTTCGATCT 7817 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | || |||||||||| |||||| | |||||||||| Sbjct 7816 ATATCTTAGCAGAGTGCTTTGTTTTAATTAAACAGTCG 7779 >seq3839 Length=2328 Score = 120 bits (132), Expect = 8e-25 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| || ||| ||||||||||||| | | |||||||| Sbjct 1846 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGT 1787 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 1786 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 1727 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT-TCGCGTTA--GCT 183 || | || | || ||||||||||| ||||| | |||| | || | ||| || Sbjct 1726 CCCTCATCGGTAAGGCCGCCGTTTGTCGGGGATCTCTTCAAAACCTAGCTTTTTAATTCT 1667 Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 || | ||| | | || ||| |||||||||| | |||||| | ||| || | | Sbjct 1666 AAGCAAATCCGTCACCCAGCCGACACCGGGCAGACATCACACTCAATATATCGATATCTA 1607 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | || |||||||||| |||||| |||||||||||| Sbjct 1606 TCTTAGCAGAGTGCTCTGTTTTAAATAAACAGTCG 1572 >seq480 Length=10311 Score = 116 bits (128), Expect = 9e-24 Identities = 184/264 (70%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||| ||| || ||| ||||||||||||| | | |||||||| ||||||| Sbjct 7362 ATCTGCACTGCTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGTATCGTTAA 7303 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 ||||| |||| | | | | ||| | | || || ||| ||||||||||||||| | || Sbjct 7302 ATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGACCCTCATC 7243 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 | || |||||||||||| ||||| ||| |||| || || || | || Sbjct 7242 GGTAAGGCCGCCGTTTATCGGGGTTTCCTTCAA------AGCCATAAAAAAGCAAATTCG 7189 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 ||| || ||| ||| |||||| | |||||| | ||| || | || | || ||| || Sbjct 7188 TTATCCAGCCGACACAGGGCAGACATCACACTCAATATTTCGATTTATATCTTAGCAAAG 7129 Query 255 TGCTGTGTTTTTAATAAACAGTCG 278 ||||||||||| ||||||||||| Sbjct 7128 TGCTGTGTTTTAGATAAACAGTCG 7105 >seq3059 Length=37941 Score = 114 bits (126), Expect = 3e-23 Identities = 195/277 (70%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| Sbjct 21390 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 21331 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||| Sbjct 21330 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGCATTCTGCTACCTTAGGA 21271 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGG-CTTCGATCAAGAGCTTCGC---GTTAGC 182 || | | || || ||||||| || | ||||| ||| |||| ||||| | || | | Sbjct 21270 CCCTCA-TGGTAAGGCCGCCATTGATCGGGGTTTTCCTTCAA-AGCTTATCTTAGTCAAC 21213 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-T 241 ||| | ||| || || ||| || |||||| |||||| | |||| | | || | Sbjct 21212 TAAGCAAATCCGATAGCCAGCCGACATAGGGCAGAGATCACACTCAATACTTTGAATTAT 21153 Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 || |||||| |||||| |||||| | |||||||||| Sbjct 21152 TGTCTTTGCAAAGTGCTTTGTTTTAATTAAACAGTCG 21116 >seq1634 Length=4931 Score = 111 bits (122), Expect = 4e-22 Identities = 283/427 (66%), Gaps = 28/427 (7%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| Sbjct 2820 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 2761 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 2760 ATCGTTAACTCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 2701 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT---TCGCGTTAG-- 181 || | || | || ||||||| || | | ||| || |||| | | | | |||| Sbjct 2700 CCCTCATAGGTAAGGCCGCCATTAATCAGGGTATCCTTCAAAACTTAACTTGATTTAGTC 2641 Query 182 --CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 ||| ||| ||||||| | | || |||||| |||||| | |||| | | | Sbjct 2640 AATTAAGAAAATCTGTTAACCTACTGACATTGGGCAGAAATCACACTCAATACTTTGA-T 2582 Query 240 TTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT---CTTC 296 || | ||||||||||||| |||||| | |||||||||| | || ||| |||| Sbjct 2581 TTTATCTTTGCAGAGTGCTTTGTTTTAATTAAACAGTCGTACAACACTATTATATGCTTC 2522 Query 297 --GACCGGCATGAGC--TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCG 352 || ||| || ||| || ||| | |||| | |||| ||||| Sbjct 2521 CTATCCTTCATCTGCTTTTAAACAGAAAG------------AACGGCTCTCCTTATCCCG 2474 Query 353 AAGTTACGGT-GCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411 |||||||||| | | ||||||| |||||||| |||| |||| |||||| |||| Sbjct 2473 AAGTTACGGTAGTCATTTTGCCGAGTTCCTTAATGATTGTTCACTCATTCGCCTTTGTAT 2414 Query 412 TCTCTAC 418 |||||| Sbjct 2413 ACTCTAC 2407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260750942272