Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq387 132 1e-28
seq577 127 5e-27
seq3839 120 8e-25
seq480 116 9e-24
seq3059 114 3e-23
seq1634 111 4e-22
>seq387
Length=6249
Score = 132 bits (146), Expect = 1e-28
Identities = 195/274 (71%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| || | |||| ||| | ||| ||||||||||||| | | ||||||||
Sbjct 5864 TAAACAGTATCTGCACTGTTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGT 5923
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 5924 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 5983
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTA 184
|| | || | || |||||||||||| ||||| ||| ||||| | || | || | |
Sbjct 5984 CCCTCATAGATAAGGCCGCCGTTTATCGGGGTTTCCATCAAAACCTGACCTTTTAAATCA 6043
Query 185 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244
| |||| ||| || || ||| |||||| | |||||| |||||| || | ||
Sbjct 6044 AGAAAATCAGTTACCCGGTCGACACGGGGCAGACATCACACTCTATACATCGA-ATTAAC 6102
Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
|| ||||||||||||||||| | ||||||||||
Sbjct 6103 CTTCGCAGAGTGCTGTGTTTTAATTAAACAGTCG 6136
>seq577
Length=9315
Score = 127 bits (140), Expect = 5e-27
Identities = 197/278 (71%), Gaps = 9/278 (3%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| |||||| ||| ||||||||||||| | | |||||||
Sbjct 8053 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGCCAATCATCAAGACAGCTGTTGT 7994
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 7993 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 7934
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
|| | || | || |||||||||||| ||||| ||| |||| | | | || || |||
Sbjct 7933 CCCTCATCGGTAAGGCCGCCGTTTATCGGGGTTTCCTTCAA-AACCTGGCCTT--TTAAT 7877
Query 187 CCCA--TCAA----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||| | || ||| || ||| ||| |||||| | |||||| | ||| || | |
Sbjct 7876 TCCAAGTAAATTCGTTACCCAGCCGACACAGGGCAGACATCACACTCAATATTTCGATCT 7817
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| || |||||||||| |||||| | ||||||||||
Sbjct 7816 ATATCTTAGCAGAGTGCTTTGTTTTAATTAAACAGTCG 7779
>seq3839
Length=2328
Score = 120 bits (132), Expect = 8e-25
Identities = 193/275 (70%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| || | |||| ||| || ||| ||||||||||||| | | ||||||||
Sbjct 1846 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGT 1787
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 1786 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 1727
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT-TCGCGTTA--GCT 183
|| | || | || ||||||||||| ||||| | |||| | || | ||| ||
Sbjct 1726 CCCTCATCGGTAAGGCCGCCGTTTGTCGGGGATCTCTTCAAAACCTAGCTTTTTAATTCT 1667
Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243
|| | ||| | | || ||| |||||||||| | |||||| | ||| || | |
Sbjct 1666 AAGCAAATCCGTCACCCAGCCGACACCGGGCAGACATCACACTCAATATATCGATATCTA 1607
Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| || |||||||||| |||||| ||||||||||||
Sbjct 1606 TCTTAGCAGAGTGCTCTGTTTTAAATAAACAGTCG 1572
>seq480
Length=10311
Score = 116 bits (128), Expect = 9e-24
Identities = 184/264 (70%), Gaps = 6/264 (2%)
Strand=Plus/Minus
Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74
|||| ||| || ||| ||||||||||||| | | |||||||| |||||||
Sbjct 7362 ATCTGCACTGCTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGTATCGTTAA 7303
Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134
||||| |||| | | | | ||| | | || || ||| ||||||||||||||| | ||
Sbjct 7302 ATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGACCCTCATC 7243
Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194
| || |||||||||||| ||||| ||| |||| || || || | ||
Sbjct 7242 GGTAAGGCCGCCGTTTATCGGGGTTTCCTTCAA------AGCCATAAAAAAGCAAATTCG 7189
Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254
||| || ||| ||| |||||| | |||||| | ||| || | || | || ||| ||
Sbjct 7188 TTATCCAGCCGACACAGGGCAGACATCACACTCAATATTTCGATTTATATCTTAGCAAAG 7129
Query 255 TGCTGTGTTTTTAATAAACAGTCG 278
||||||||||| |||||||||||
Sbjct 7128 TGCTGTGTTTTAGATAAACAGTCG 7105
>seq3059
Length=37941
Score = 114 bits (126), Expect = 3e-23
Identities = 195/277 (70%), Gaps = 7/277 (3%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||| | | ||||||||
Sbjct 21390 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 21331
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||
Sbjct 21330 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGCATTCTGCTACCTTAGGA 21271
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGG-CTTCGATCAAGAGCTTCGC---GTTAGC 182
|| | | || || ||||||| || | ||||| ||| |||| ||||| | || | |
Sbjct 21270 CCCTCA-TGGTAAGGCCGCCATTGATCGGGGTTTTCCTTCAA-AGCTTATCTTAGTCAAC 21213
Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-T 241
||| | ||| || || ||| || |||||| |||||| | |||| | | || |
Sbjct 21212 TAAGCAAATCCGATAGCCAGCCGACATAGGGCAGAGATCACACTCAATACTTTGAATTAT 21153
Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
|| |||||| |||||| |||||| | ||||||||||
Sbjct 21152 TGTCTTTGCAAAGTGCTTTGTTTTAATTAAACAGTCG 21116
>seq1634
Length=4931
Score = 111 bits (122), Expect = 4e-22
Identities = 283/427 (66%), Gaps = 28/427 (7%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||| | | ||||||||
Sbjct 2820 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 2761
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 2760 ATCGTTAACTCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 2701
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT---TCGCGTTAG-- 181
|| | || | || ||||||| || | | ||| || |||| | | | | ||||
Sbjct 2700 CCCTCATAGGTAAGGCCGCCATTAATCAGGGTATCCTTCAAAACTTAACTTGATTTAGTC 2641
Query 182 --CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239
||| ||| ||||||| | | || |||||| |||||| | |||| | | |
Sbjct 2640 AATTAAGAAAATCTGTTAACCTACTGACATTGGGCAGAAATCACACTCAATACTTTGA-T 2582
Query 240 TTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT---CTTC 296
|| | ||||||||||||| |||||| | |||||||||| | || ||| ||||
Sbjct 2581 TTTATCTTTGCAGAGTGCTTTGTTTTAATTAAACAGTCGTACAACACTATTATATGCTTC 2522
Query 297 --GACCGGCATGAGC--TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCG 352
|| ||| || ||| || ||| | |||| | |||| |||||
Sbjct 2521 CTATCCTTCATCTGCTTTTAAACAGAAAG------------AACGGCTCTCCTTATCCCG 2474
Query 353 AAGTTACGGT-GCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411
|||||||||| | | ||||||| |||||||| |||| |||| |||||| ||||
Sbjct 2473 AAGTTACGGTAGTCATTTTGCCGAGTTCCTTAATGATTGTTCACTCATTCGCCTTTGTAT 2414
Query 412 TCTCTAC 418
||||||
Sbjct 2413 ACTCTAC 2407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260750942272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |