Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3818 107 6e-21 seq228 80.6 8e-13 seq779 78.8 3e-12 >seq3818 Length=55578 Score = 107 bits (118), Expect = 6e-21 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||| | | ||| |||||||| || | || | ||||||||| |||||| ||| | | Sbjct 20501 GGGACTAAGGCAAGTCATCATGGCCTTAATATTGTGGGCTACAGACGTGCCACATAAGCC 20442 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||||||||| |||||| |||| | ||| |||||| |||| | | | | Sbjct 20441 TATACAAAGGGGTGCGAAATTGCGAAATTGAGCTAATCCCCTAAAAAGGGATATAATATG 20382 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475 |||||||||||| || ||||||| ||||| ||||| ||||||||||| || || | Sbjct 20381 GATTGTAGTCTGTAATTCGACTACATGAAAAAGGAATTACTAGTAATCGTGTATAAGTAC 20322 Query 476 GCTACGGTGAAT 487 | ||||||||| Sbjct 20321 GTCACGGTGAAT 20310 >seq228 Length=1737 Score = 80.6 bits (88), Expect = 8e-13 Identities = 136/197 (69%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||| | | ||| |||||||| || | || ||||||| | |||||| ||| | Sbjct 1348 GGGACCAAGACAAGTCATCATGGCCTTAATAGCGTGGGCTATAGACGTGCCACATATACC 1407 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTT-----CTCA 410 ||||||||| || | | | | | ||| ||||||||||| ||| || Sbjct 1408 TCTACAAAGGGATGCAATATTGTAAAATGGAGCTAATCCCATAAAATTGGATATAACTAT 1467 Query 411 GTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC 470 | | ||||||||||| || ||||||| ||||| |||||| ||||||||||| ||| Sbjct 1468 TTGTGAATTGTAGTCTGAAATTCGACTACATGAATATGGAATTACTAGTAATCGTGAATC 1527 Query 471 AGCATGCTACGGTGAAT 487 | || | ||||||||| Sbjct 1528 ACCACGTCACGGTGAAT 1544 >seq779 Length=1152 Score = 78.8 bits (86), Expect = 3e-12 Identities = 130/186 (70%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| |||||||| || | || | ||||||| | ||||||| || | || ||||| | Sbjct 744 CAAGTCATCATGGCCTTAATAACGTGGGCTATAGACGTGCTGCA-TATACCTAACAAAAG 802 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC----GGATTGT 421 | ||| | | | | | |||| ||||| |||| | | | | | ||||||| Sbjct 803 GAAGCAATATTGTAAAATAAAGCTAATCCTTAAAAGAGGATATAACTATTTGTGGATTGT 862 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481 |||||| |||||||||| ||||| ||||| ||||||||||| |||| || | ||| Sbjct 863 AGTCTGTAACTCGACTACATGAATAAGGAATTACTAGTAATCGTGAATCACCACGTCACG 922 Query 482 GTGAAT 487 |||||| Sbjct 923 GTGAAT 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503941479360