Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq3818 107 6e-21
seq228 80.6 8e-13
seq779 78.8 3e-12
>seq3818
Length=55578
Score = 107 bits (118), Expect = 6e-21
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
||||| | | ||| |||||||| || | || | ||||||||| |||||| ||| | |
Sbjct 20501 GGGACTAAGGCAAGTCATCATGGCCTTAATATTGTGGGCTACAGACGTGCCACATAAGCC 20442
Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415
|||||||||| |||||| |||| | ||| |||||| |||| | | | |
Sbjct 20441 TATACAAAGGGGTGCGAAATTGCGAAATTGAGCTAATCCCCTAAAAAGGGATATAATATG 20382
Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475
|||||||||||| || ||||||| ||||| ||||| ||||||||||| || || |
Sbjct 20381 GATTGTAGTCTGTAATTCGACTACATGAAAAAGGAATTACTAGTAATCGTGTATAAGTAC 20322
Query 476 GCTACGGTGAAT 487
| |||||||||
Sbjct 20321 GTCACGGTGAAT 20310
>seq228
Length=1737
Score = 80.6 bits (88), Expect = 8e-13
Identities = 136/197 (69%), Gaps = 5/197 (3%)
Strand=Plus/Plus
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
||||| | | ||| |||||||| || | || ||||||| | |||||| ||| |
Sbjct 1348 GGGACCAAGACAAGTCATCATGGCCTTAATAGCGTGGGCTATAGACGTGCCACATATACC 1407
Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTT-----CTCA 410
||||||||| || | | | | | ||| ||||||||||| ||| ||
Sbjct 1408 TCTACAAAGGGATGCAATATTGTAAAATGGAGCTAATCCCATAAAATTGGATATAACTAT 1467
Query 411 GTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC 470
| | ||||||||||| || ||||||| ||||| |||||| ||||||||||| |||
Sbjct 1468 TTGTGAATTGTAGTCTGAAATTCGACTACATGAATATGGAATTACTAGTAATCGTGAATC 1527
Query 471 AGCATGCTACGGTGAAT 487
| || | |||||||||
Sbjct 1528 ACCACGTCACGGTGAAT 1544
>seq779
Length=1152
Score = 78.8 bits (86), Expect = 3e-12
Identities = 130/186 (70%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365
||| |||||||| || | || | ||||||| | ||||||| || | || ||||| |
Sbjct 744 CAAGTCATCATGGCCTTAATAACGTGGGCTATAGACGTGCTGCA-TATACCTAACAAAAG 802
Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC----GGATTGT 421
| ||| | | | | | |||| ||||| |||| | | | | | |||||||
Sbjct 803 GAAGCAATATTGTAAAATAAAGCTAATCCTTAAAAGAGGATATAACTATTTGTGGATTGT 862
Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481
|||||| |||||||||| ||||| ||||| ||||||||||| |||| || | |||
Sbjct 863 AGTCTGTAACTCGACTACATGAATAAGGAATTACTAGTAATCGTGAATCACCACGTCACG 922
Query 482 GTGAAT 487
||||||
Sbjct 923 GTGAAT 928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503941479360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |