Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03]
3,891 sequences; 39,229,750 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq2164 102 5e-20
seq68 102 5e-20
seq3869 100 2e-19
seq3600 100 2e-19
seq2614 100 2e-19
seq1052 100 2e-19
seq711 100 2e-19
seq582 95.1 7e-18
seq552 95.1 7e-18
seq499 95.1 7e-18
seq957 86.0 4e-15
seq839 86.0 4e-15
seq614 82.4 5e-14
seq3386 77.0 2e-12
seq1287 77.0 2e-12
>seq2164
Length=4351
Score = 102 bits (112), Expect = 5e-20
Identities = 83/94 (88%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 31 AAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGT 90
|||||| | ||||| | |||||| ||||||| || ||||||||| ||||||||||| ||
Sbjct 1623 AAGCCAGT-CCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGT 1678
Query 91 GTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||||||||||| |||||||||||
Sbjct 1679 GTACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 1711
>seq68
Length=1997
Score = 102 bits (112), Expect = 5e-20
Identities = 83/94 (88%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 31 AAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGT 90
|||||| | ||||| | |||||| ||||||| || ||||||||| ||||||||||| ||
Sbjct 1930 AAGCCAGT-CCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGT 1875
Query 91 GTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||||||||||| |||||||||||
Sbjct 1874 GTACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 1842
>seq3869
Length=17595
Score = 100 bits (110), Expect = 2e-19
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91
||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| |||
Sbjct 12820 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 12765
Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||||||||||||||| |||||||||||
Sbjct 12764 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 12733
>seq3600
Length=2975
Score = 100 bits (110), Expect = 2e-19
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91
||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| |||
Sbjct 839 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 784
Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||||||||||||||| |||||||||||
Sbjct 783 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 752
>seq2614
Length=4012
Score = 100 bits (110), Expect = 2e-19
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91
||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| |||
Sbjct 2379 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 2434
Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||||||||||||||| |||||||||||
Sbjct 2435 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 2466
>seq1052
Length=10576
Score = 100 bits (110), Expect = 2e-19
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91
||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| |||
Sbjct 6965 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 6910
Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||||||||||||||| |||||||||||
Sbjct 6909 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 6878
>seq711
Length=1201
Score = 100 bits (110), Expect = 2e-19
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91
||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| |||
Sbjct 116 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 171
Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||||||||||||||| |||||||||||
Sbjct 172 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 203
>seq582
Length=1316
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1040 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1097
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 1098 TAAT-CAACGCGAGCT 1112
>seq552
Length=1350
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 161 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 104
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 103 TAAT-CAACGCGAGCT 89
>seq499
Length=10133
Score = 95.1 bits (104), Expect = 7e-18
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 5437 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 5494
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 5495 TAAT-CAACGCGAGCT 5509
>seq957
Length=6764
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| |||||||| || ||||||||||||||||||||
Sbjct 3179 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGTGGTGTGTACAAAGGGCAGGGACG 3122
Query 109 TAATACAACGCAAGCT 124
|||| |||| | ||||
Sbjct 3121 TAAT-CAACACGAGCT 3107
>seq839
Length=1110
Score = 86.0 bits (94), Expect = 4e-15
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 63 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 6
Query 109 TAAT 112
||||
Sbjct 5 TAAT 2
>seq614
Length=9001
Score = 82.4 bits (90), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| ||| ||||||| || |||||||| |||||||||||||||||| |
Sbjct 3945 CTCACTGAGCCATTCAATT-GGTAGTA-GCAACGGGCGGTGTGTACAAAGGGCAGGGATG 3888
Query 109 TAATACAACGCAAGCT 124
|||| ||| |||||||
Sbjct 3887 TAAT-CAATGCAAGCT 3873
>seq3386
Length=332
Score = 77.0 bits (84), Expect = 2e-12
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107
|||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 57 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 1
>seq1287
Length=35519
Score = 77.0 bits (84), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||| ||||||| | | ||||||| || |||||| | ||||||||||||||||||||
Sbjct 30142 CTCACTGAGCCATTCAAAT-GGTAGTA-GCAACGGGCAGTGTGTACAAAGGGCAGGGACG 30085
Query 109 TAATACAACGCAAGCT 124
|||| ||| |||||||
Sbjct 30084 TAAT-CAATGCAAGCT 30070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300789027380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |