Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F000938525.1_202015-03-03] 3,891 sequences; 39,229,750 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq2164 102 5e-20 seq68 102 5e-20 seq3869 100 2e-19 seq3600 100 2e-19 seq2614 100 2e-19 seq1052 100 2e-19 seq711 100 2e-19 seq582 95.1 7e-18 seq552 95.1 7e-18 seq499 95.1 7e-18 seq957 86.0 4e-15 seq839 86.0 4e-15 seq614 82.4 5e-14 seq3386 77.0 2e-12 seq1287 77.0 2e-12 >seq2164 Length=4351 Score = 102 bits (112), Expect = 5e-20 Identities = 83/94 (88%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 31 AAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGT 90 |||||| | ||||| | |||||| ||||||| || ||||||||| ||||||||||| || Sbjct 1623 AAGCCAGT-CCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGT 1678 Query 91 GTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||||||||||| ||||||||||| Sbjct 1679 GTACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 1711 >seq68 Length=1997 Score = 102 bits (112), Expect = 5e-20 Identities = 83/94 (88%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 31 AAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGT 90 |||||| | ||||| | |||||| ||||||| || ||||||||| ||||||||||| || Sbjct 1930 AAGCCAGT-CCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGT 1875 Query 91 GTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||||||||||| ||||||||||| Sbjct 1874 GTACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 1842 >seq3869 Length=17595 Score = 100 bits (110), Expect = 2e-19 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| ||| Sbjct 12820 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 12765 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||||| ||||||||||| Sbjct 12764 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 12733 >seq3600 Length=2975 Score = 100 bits (110), Expect = 2e-19 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| ||| Sbjct 839 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 784 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||||| ||||||||||| Sbjct 783 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 752 >seq2614 Length=4012 Score = 100 bits (110), Expect = 2e-19 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| ||| Sbjct 2379 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 2434 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||||| ||||||||||| Sbjct 2435 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 2466 >seq1052 Length=10576 Score = 100 bits (110), Expect = 2e-19 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| ||| Sbjct 6965 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 6910 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||||| ||||||||||| Sbjct 6909 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 6878 >seq711 Length=1201 Score = 100 bits (110), Expect = 2e-19 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 32 AGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTG 91 ||||| | || ||| |||||| ||||||| || ||||||||| ||||||||||| ||| Sbjct 116 AGCCAGTCCC--AAGGCCTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTG 171 Query 92 TACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||||| ||||||||||| Sbjct 172 TACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 203 >seq582 Length=1316 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1040 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1097 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1098 TAAT-CAACGCGAGCT 1112 >seq552 Length=1350 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 161 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 104 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 103 TAAT-CAACGCGAGCT 89 >seq499 Length=10133 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 5437 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 5494 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 5495 TAAT-CAACGCGAGCT 5509 >seq957 Length=6764 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| |||||||| || |||||||||||||||||||| Sbjct 3179 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGTGGTGTGTACAAAGGGCAGGGACG 3122 Query 109 TAATACAACGCAAGCT 124 |||| |||| | |||| Sbjct 3121 TAAT-CAACACGAGCT 3107 >seq839 Length=1110 Score = 86.0 bits (94), Expect = 4e-15 Identities = 59/64 (92%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 63 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 6 Query 109 TAAT 112 |||| Sbjct 5 TAAT 2 >seq614 Length=9001 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| ||| ||||||| || |||||||| |||||||||||||||||| | Sbjct 3945 CTCACTGAGCCATTCAATT-GGTAGTA-GCAACGGGCGGTGTGTACAAAGGGCAGGGATG 3888 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 3887 TAAT-CAATGCAAGCT 3873 >seq3386 Length=332 Score = 77.0 bits (84), Expect = 2e-12 Identities = 54/59 (92%), Gaps = 2/59 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 |||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 57 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 1 >seq1287 Length=35519 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| | | ||||||| || |||||| | |||||||||||||||||||| Sbjct 30142 CTCACTGAGCCATTCAAAT-GGTAGTA-GCAACGGGCAGTGTGTACAAAGGGCAGGGACG 30085 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 30084 TAAT-CAATGCAAGCT 30070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300789027380