Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2218 183 4e-44 seq1973 181 1e-43 seq1176 181 1e-43 seq342 181 1e-43 seq793 172 7e-41 seq1916 170 2e-40 seq821 170 2e-40 seq979 168 8e-40 seq902 168 8e-40 seq762 168 8e-40 seq3044 167 3e-39 seq1121 161 1e-37 seq3679 158 1e-36 seq3891 154 2e-35 seq365 147 3e-33 seq660 145 9e-33 seq1026 141 1e-31 seq3857 107 2e-21 seq1096 105 8e-21 >seq2218 Length=1997 Score = 183 bits (202), Expect = 4e-44 Identities = 159/192 (83%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 901 CTAGAAACCAACAAAATAGA-ACCAACGTCCTATTCTATTATTCCATGCTAATGTATTCG 843 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 842 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAGCA 783 Query 126 C-ACCAATGAAGG-CATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| ||||| ||| | ||||| ||| || ||| | || | |||||| ||| Sbjct 782 CGCCCAGCGAAGGACATGC-GGCTCCCCAGAAGAAAGGCCCGGCCGAACCAGTACACGCG 724 Query 184 GTGAGGCGGACC 195 || ||||||||| Sbjct 723 GTTAGGCGGACC 712 >seq1973 Length=862 Score = 181 bits (200), Expect = 1e-43 Identities = 159/193 (82%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || Sbjct 381 CTAGAAACCAACAAAATAGAACCCCACGTCCTATTCGATTATTCCATGCTAATGTATCCG 322 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 321 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 262 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| | ||||| ||| ||| ||| | || |||| | ||| Sbjct 261 CACCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTGCACGC 203 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 202 GGTGAGGCGGACC 190 >seq1176 Length=1614 Score = 181 bits (200), Expect = 1e-43 Identities = 159/193 (82%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || Sbjct 184 CTAGAAACCAACAAAATAGAACCCCACGTCCTATTCGATTATTCCATGCTAATGTATCCG 243 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 244 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 303 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| | ||||| ||| ||| ||| | || |||| | ||| Sbjct 304 CACCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTGCACGC 362 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 363 GGTGAGGCGGACC 375 >seq342 Length=841 Score = 181 bits (200), Expect = 1e-43 Identities = 159/193 (82%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || |||||||||||| |||||||||||||||||||| || Sbjct 480 CTAGAAACCAACAAAATAGAAACCCACGTCCTATTCGATTATTCCATGCTAATGTATCCG 539 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || ||||||||| |||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 540 AGCATAGGCCTGCTTTTAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 599 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| | ||||| ||| ||| ||| | || |||| | ||| Sbjct 600 CACCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTGCACGC 658 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 659 GGTGAGGCGGACC 671 >seq793 Length=1117 Score = 172 bits (190), Expect = 7e-41 Identities = 156/193 (81%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || Sbjct 723 CTAGAAACCAACAAAATAGAACCCCACGTCCTATTCGATTATTCCATGCTAATGTATCCG 782 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| | || ||||||||||||| ||| | ||| Sbjct 783 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTTAAAGTAAAAGTCCTGGKTCCCCSGCA 842 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| | ||||| ||| ||| | | | || |||| | ||| Sbjct 843 CACCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAASGCCCGGCCGGACCAGTGCACGC 901 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 902 GGTGAGGCGGACC 914 >seq1916 Length=9001 Score = 170 bits (188), Expect = 2e-40 Identities = 136/160 (85%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct 3116 CTAGAAACCAACAAAATAGAACCCCACGTCCTATTTGATTATTCCATGCTAATGTATCCG 3057 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| Sbjct 3056 AGCATAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCTGGCA 2997 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGC 163 || ||| |||| ||||| | ||||| ||| ||| | ||| Sbjct 2996 CATCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGC 2958 >seq821 Length=1482 Score = 170 bits (188), Expect = 2e-40 Identities = 156/193 (81%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||| || Sbjct 605 CTAGAAACCAACAAAATAGAACCCCACSTCCTATTCGATTATTTCATGCTAATGTATCCG 664 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || ||||||||| |||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 665 AGCATAGGCCTGCTTTKAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 724 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| | ||||| ||| ||| ||| | || |||| | ||| Sbjct 725 CACCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTGCACGC 783 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 784 GGTGAGGCGGACC 796 >seq979 Length=1201 Score = 168 bits (186), Expect = 8e-40 Identities = 130/149 (87%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 960 CTAGAAACCAACAAAATAGAACCG-ATGTCCTATTCTATTATTCCATGCTAATGTATTCG 1018 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||||||||||||||||||||| | | Sbjct 1019 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAAGTCCTGGTTCCCCACTA 1078 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || ||| |||| |||||| |||||| ||| Sbjct 1079 CACCCAGTGAAGGGCATA-GGGCTCCCCA 1106 >seq902 Length=4012 Score = 168 bits (186), Expect = 8e-40 Identities = 130/149 (87%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 3568 CTAGAAACCAACAAAATAGAACCG-ATGTCCTATTCTATTATTCCATGCTAATGTATTCG 3626 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||||||||||||||||||||| | | Sbjct 3627 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAAGTCCTGGTTCCCCACTA 3686 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || ||| |||| |||||| |||||| ||| Sbjct 3687 CACCCAGTGAAGGGCATA-GGGCTCCCCA 3714 >seq762 Length=4351 Score = 168 bits (186), Expect = 8e-40 Identities = 130/149 (87%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 3500 CTAGAAACCAACAAAATAGAACCG-ATGTCCTATTCTATTATTCCATGCTAATGTATTCG 3558 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||||||||||||||||||||| | || Sbjct 3559 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAAGTCCTGGTTCCCCACCA 3618 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || ||| |||| ||||| |||||| ||| Sbjct 3619 CACCCAGTGAAGGGCAT-GGGGCTCCCCA 3646 >seq3044 Length=10133 Score = 167 bits (184), Expect = 3e-39 Identities = 154/193 (80%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 | ||||| | |||||||| | ||| |||||||| |||||||||||||||||||| || Sbjct 6266 CYAGAAAMCMACAAAATARAACCCCACSTCCTATTCGATTATTCCATGCTAATGTATCCG 6325 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 6326 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 6385 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| | ||||| ||| ||| ||| | || |||| | ||| Sbjct 6386 CACCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTGCACGC 6444 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 6445 GGTGAGGCGGACC 6457 >seq1121 Length=10576 Score = 161 bits (178), Expect = 1e-37 Identities = 117/133 (88%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 6121 CTAGAAACCAACAAAATAGAACCG-ATGTCCTATTCTATTATTCCATGCTAATGTATTCG 6063 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||||||||||||||| ||||| | || Sbjct 6062 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAAGTCCTAGTTCCCCACCA 6003 Query 126 CA-CCAATGAAGG 137 || ||| |||||| Sbjct 6002 CACCCAGTGAAGG 5990 >seq3679 Length=2820 Score = 158 bits (174), Expect = 1e-36 Identities = 108/119 (91%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 976 CTAGAAACCAACAAAATAGAACCG-ATGTCCTATTCTATTATTCCATGCTAATGTATTCG 1034 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124 || | |||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 1035 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAAGTCCTGGTTCC-CCGC 1092 >seq3891 Length=20417 Score = 154 bits (170), Expect = 2e-35 Identities = 126/149 (85%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||| |||| | || ||| |||| |||||||||||||||||||| || Sbjct 12120 CTAGAAACCAACAACATAGAACCCCATGTCTTATTTGATTATTCCATGCTAATGTATCCG 12061 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || ||| |||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 12060 AGCATAGGCCGGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 12001 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || ||| |||| ||||||| ||||| ||| Sbjct 12000 CACCCAGTGAAGGGCATAC-GGCTCCCCA 11973 >seq365 Length=35519 Score = 147 bits (162), Expect = 3e-33 Identities = 125/149 (84%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 || |||||||||||||||| | ||||||||||| |||||| ||||||||||||| || Sbjct 22393 CTGGAAACCAACAAAATAGAACCCCACGTCCTATTTGATTATTTCATGCTAATGTATCCG 22452 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| |||||||||||| |||| ||| Sbjct 22453 AGCATAGGCCTGCTTTGAACACTCTAATTTT-TCAAAGTAAAAGTCCTGATTCCCTGGCA 22511 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || ||| |||| ||||| | ||||| ||| Sbjct 22512 CACCCAGTGAAGGGCATGC-GGCTCCCCA 22539 >seq660 Length=6764 Score = 145 bits (160), Expect = 9e-33 Identities = 124/149 (83%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| |||||||||| ||| || ||||| |||||||||||||||||||| | Sbjct 2350 CTAGAAACTAACAAAATAGAACTCCACATCTTATTCGATTATTCCATGCTAATGTATCCA 2291 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| |||||||||||| |||| ||| Sbjct 2290 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCCTGGCA 2231 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || ||| |||| ||||||| ||||| ||| Sbjct 2230 CACCCAGTGAAGGGCATAC-GGCTCCCCA 2203 >seq1026 Length=5605 Score = 141 bits (156), Expect = 1e-31 Identities = 123/149 (83%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| ||||||| || ||| || ||||| |||||||||||||||||||| | Sbjct 4778 CTAGAAACTAACAAAACAGAACTCCACATCTTATTCGATTATTCCATGCTAATGTATCTG 4837 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||| ||| |||| |||||||||||| |||| ||| Sbjct 4838 AGCATAGGCCTGCTTTGAACACTCTAACTTTTTCAAAGTAAAAGTCCTGATTCCCTGGCA 4897 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA 152 || |||||||| ||||||| ||||| ||| Sbjct 4898 CACCCAATGAAGGGCATAC-GGCTCCCCA 4925 >seq3857 Length=21631 Score = 107 bits (118), Expect = 2e-21 Identities = 89/105 (85%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 50 CATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||||||||||||| | || || |||||||||||||||||||| ||| |||| ||||||| Sbjct 19623 CATGCTAATGTATCTGAGCATAGGCCTGCTTTGAACACTCTAACTTTTTCAAAGTAAAAG 19682 Query 110 TCCTGGTTCCTCCGCACA-CCAATGAA-GGCATACGGGCTCACCA 152 ||||| |||| ||||| |||||||| ||||||| ||||| ||| Sbjct 19683 TCCTGATTCCCTGGCACACCCAATGAAGGGCATAC-GGCTCCCCA 19726 >seq1096 Length=57755 Score = 105 bits (116), Expect = 8e-21 Identities = 108/137 (79%), Gaps = 7/137 (5%) Strand=Plus/Plus Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61 |||| |||||||||||||| ||| |||| || |||||| ||||||| ||| |||||| Sbjct 21743 GTCT-TAGAAACCAACAAA-TAGAACTGCACATCTTATTCTCTTATTCCCTGCCAATGTA 21800 Query 62 TTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTC 121 | || | |||||||||| |||| |||| || |||||||| |||||||||||||| Sbjct 21801 TCCGAGTATAAGCCTGCTCTGAATACTCCAAATTTCTCAA----AAAGTCCTGGTTCCCT 21856 Query 122 CGCA-CACCAATGAAGG 137 ||| |||| |||||| Sbjct 21857 GGCATAACCAGTGAAGG 21873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595177564494