Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3190 181 8e-41 seq1688 109 4e-19 >seq3190 Length=146739 Score = 181 bits (200), Expect = 8e-41 Identities = 461/693 (67%), Gaps = 14/693 (2%) Strand=Plus/Plus Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || || | ||||| |||| | || ||||| | || | ||| || || | || || Sbjct 23148 ACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGTCCATTCGCCGTTCTTCTCG 23207 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 ||||| |||||| ||||| || |||| || || |||| |||||||| || || Sbjct 23208 ACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAATAGATCGCGCGCGCGGACT 23267 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 ||||| | |||||||| ||||||||||| | ||||| |||| ||||| ||||| || Sbjct 23268 TCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAAGACATCGGCGTGCCAAGGC 23327 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || ||||| || || |||| || || ||| |||||||||||||| || | ||| Sbjct 23328 TCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACCTTGGTCGACATATCTCGCG 23387 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 |||||||||||||| | ||| || || | |||||| || || || |||||| | Sbjct 23388 GTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAGGACCCGTTTGTGCCGGCA 23447 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 ||| || || || || ||| |||| ||||| ||||| || || ||||||||| Sbjct 23448 ATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCCAATGCCTCCCGCCGTCTTC 23507 Query 66632 GAGATGGCAGCACA-ATCGGCCA-CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689 ||||| ||| || || | | |||| | | || || |||||| ||| | || | Sbjct 23508 GAGATCAGAGCGCAGGTCTTCAAGGTGTC--GTAGATACCTTCAATGCTGTCCTCTTTCA 23565 Query 66690 TGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGG 66749 || | |||| |||| || | || |||| || || | || |||||| || | Sbjct 23566 TGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACCAGCGTTGAAGAGAGTTG 23625 Query 66750 GTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAA 66809 | | ||||| || || || | ||||||| ||| || ||||| | ||| || | Sbjct 23626 GGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGTCTCAAGGACCTTCTCGA 23685 Query 66810 TGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTT---CG 66865 || || || || || | || ||| ||||| | | || |||||||| | || Sbjct 23686 CGTCATCTCCCCAGATGCCAACAGCGACA-CGCATTATCATGTGTTGAGGCCTCTCAGCG 23744 Query 66866 ACC-AGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 ||| |||| | || | | | | || || || || || ||||||| ||| ||||| Sbjct 23745 ACCTTGCCG----TCGAGACGAAGCAGATAAGACCGCTCGAGAGTCTTGAAACCGAAGTA 23800 Query 66925 CGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 ||| |||||||| | ||| |||||||| Sbjct 23801 TTGGTAGTTGAAATCTCGATCATAGACGATGGC 23833 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || || ||||| || || | ||||| || |||| ||| || || || |||||||||| | Sbjct 22821 GGTAGTGCAAGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGTATACTCGATA 22880 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||||||||||| ||| || || || || || | ||||| || || |||||||| Sbjct 22881 ATTTCGGTGCACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTTGCTCTTGCGG 22940 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 |||||||| |||||||||| ||| | || |||||||||| |||| ||| | ||| Sbjct 22941 TTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTGGGCCTCGAGGATT 23000 Query 66182 GCGTGCCAAAG 66192 | || ||| || Sbjct 23001 GAGTACCATAG 23011 >seq1688 Length=109735 Score = 109 bits (120), Expect = 4e-19 Identities = 202/293 (69%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| ||||| || |||||||| | ||| ||| | || | || Sbjct 94789 TGGCAGATGTACAAGAAGGCCGAAGCGTCATTCTGGACCGCGGAAGAGATTGACCTCTCG 94848 Query 61150 AAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||||| | | || ||| | || | | ||| | ||||| ||||||| || Sbjct 94849 AAAGATTGGCACGATTGGAACAACCGACTCAACGAT-GATGAACGCTATTTCATCTCCCA 94907 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 ||| | || |||||||| || || || ||||||||||| ||||| | | || || || Sbjct 94908 TGTCCTTGCCTTCTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTCGTTGAGCGCTT 94967 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | || || || | | ||||| || || |||||||| || ||||| ||||| Sbjct 94968 CAGTGGCGAAGTTCAGATACCTGAGGCACGATGCTTCTACGGTTTTCAGATCATGATGGA 95027 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||| ||||||| |||| ||| |||||||||| || || |||| ||||| Sbjct 95028 GAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACTTATATCAAGGAGC 95080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549146704240