Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14]
3,891 sequences; 39,229,750 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq3190 181 8e-41
seq1688 109 4e-19
>seq3190
Length=146739
Score = 181 bits (200), Expect = 8e-41
Identities = 461/693 (67%), Gaps = 14/693 (2%)
Strand=Plus/Plus
Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331
|| || | ||||| |||| | || ||||| | || | ||| || || | || ||
Sbjct 23148 ACATCAGCCAGACCTGGAGCTTCGTTGGGACAGAAGAGTGTCCATTCGCCGTTCTTCTCG 23207
Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391
||||| |||||| ||||| || |||| || || |||| |||||||| || ||
Sbjct 23208 ACACGCTTCATAAAAAGATCGGGGGTCCAAAGAGCCAAGAATAGATCGCGCGCGCGGACT 23267
Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451
||||| | |||||||| ||||||||||| | ||||| |||| ||||| ||||| ||
Sbjct 23268 TCCTCCTTCCCGTGATTCTTGCGCAAGTCCAAAAACTCGAAGACATCGGCGTGCCAAGGC 23327
Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511
|| ||||| || || |||| || || ||| |||||||||||||| || | |||
Sbjct 23328 TCAAGGTAAATAGCAAACGCACCTGGCCGCTTGTTACCACCTTGGTCGACATATCTCGCG 23387
Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571
|||||||||||||| | ||| || || | |||||| || || || |||||| |
Sbjct 23388 GTGTTGTTGAAGACACGGAGCATAGGCACAATCCCGTTCGAGGACCCGTTTGTGCCGGCA 23447
Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631
||| || || || || ||| |||| ||||| ||||| || || |||||||||
Sbjct 23448 ATGTACGACCCGGTGGCTCGGATACGATGAATGTTCAGCCCAATGCCTCCCGCCGTCTTC 23507
Query 66632 GAGATGGCAGCACA-ATCGGCCA-CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689
||||| ||| || || | | |||| | | || || |||||| ||| | || |
Sbjct 23508 GAGATCAGAGCGCAGGTCTTCAAGGTGTC--GTAGATACCTTCAATGCTGTCCTCTTTCA 23565
Query 66690 TGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGG 66749
|| | |||| |||| || | || |||| || || | || |||||| || |
Sbjct 23566 TGTCAACGAGGAAGCACGATGCCAACTGTGGTTGTGGAGTACCAGCGTTGAAGAGAGTTG 23625
Query 66750 GTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAA 66809
| | ||||| || || || | ||||||| ||| || ||||| | ||| || |
Sbjct 23626 GGGAGGCGTGGGTGAAATATTTTTGAGACATAAGATTATAGGTCTCAAGGACCTTCTCGA 23685
Query 66810 TGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTT---CG 66865
|| || || || || | || ||| ||||| | | || |||||||| | ||
Sbjct 23686 CGTCATCTCCCCAGATGCCAACAGCGACA-CGCATTATCATGTGTTGAGGCCTCTCAGCG 23744
Query 66866 ACC-AGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924
||| |||| | || | | | | || || || || || ||||||| ||| |||||
Sbjct 23745 ACCTTGCCG----TCGAGACGAAGCAGATAAGACCGCTCGAGAGTCTTGAAACCGAAGTA 23800
Query 66925 CGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957
||| |||||||| | ||| ||||||||
Sbjct 23801 TTGGTAGTTGAAATCTCGATCATAGACGATGGC 23833
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
|| || ||||| || || | ||||| || |||| ||| || || || |||||||||| |
Sbjct 22821 GGTAGTGCAAGCGAAGCCAAATTGCATACTGCTACCTCATCTGGTGCAGTATACTCGATA 22880
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||||||||||| ||| || || || || || | ||||| || || ||||||||
Sbjct 22881 ATTTCGGTGCACAAATTCGAGCTACGAATTGTCCCAAGATTCTTCTGGTTGCTCTTGCGG 22940
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
|||||||| |||||||||| ||| | || |||||||||| |||| ||| | |||
Sbjct 22941 TTGCATGCGTCCTTGTACAACATAAAAGGGTTGCCGGTCTCCGTCTGGGCCTCGAGGATT 23000
Query 66182 GCGTGCCAAAG 66192
| || ||| ||
Sbjct 23001 GAGTACCATAG 23011
>seq1688
Length=109735
Score = 109 bits (120), Expect = 4e-19
Identities = 202/293 (69%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149
|||| |||||||| ||||| ||||| || |||||||| | ||| ||| | || | ||
Sbjct 94789 TGGCAGATGTACAAGAAGGCCGAAGCGTCATTCTGGACCGCGGAAGAGATTGACCTCTCG 94848
Query 61150 AAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205
||||| | | || ||| | || | | ||| | ||||| ||||||| ||
Sbjct 94849 AAAGATTGGCACGATTGGAACAACCGACTCAACGAT-GATGAACGCTATTTCATCTCCCA 94907
Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265
||| | || |||||||| || || || ||||||||||| ||||| | | || || ||
Sbjct 94908 TGTCCTTGCCTTCTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTCGTTGAGCGCTT 94967
Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325
| || || || | | ||||| || || |||||||| || ||||| |||||
Sbjct 94968 CAGTGGCGAAGTTCAGATACCTGAGGCACGATGCTTCTACGGTTTTCAGATCATGATGGA 95027
Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||| ||||||| |||| ||| |||||||||| || || |||| |||||
Sbjct 95028 GAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACTTATATCAAGGAGC 95080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397549146704240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |