Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq136 269 4e-70 seq80 223 5e-56 seq393 214 3e-53 seq59 205 1e-50 seq137 201 2e-49 seq383 192 9e-47 seq135 176 7e-42 >seq136 Length=18941 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 7361 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 7418 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||| Sbjct 7419 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 7478 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 7479 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 7536 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7537 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 7585 Score = 123 bits (136), Expect = 4e-26 Identities = 87/97 (90%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 9093 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 9150 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCA 97 ||||||||||| ||| |||||||||| ||| |||||| Sbjct 9151 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCA 9187 >seq80 Length=128910 Score = 223 bits (246), Expect = 5e-56 Identities = 169/196 (86%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 |||||||| |||||||||||| ||| |||||||||||| ||| |||||||||| ||| || Sbjct 502 TGATGACTTGCGCTTACTAGGGATT-CCTCGTTGAAGAGCAATAATTGCAATGCTCTGTC 560 Query 94 CCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT 152 |||| ||||| | | ||| | |||||||||||| ||| ||||||||| || |||| Sbjct 561 CCCAGCACGACGGAGTTTAACAAGATTACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGC 618 Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 || | | ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 619 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGCCCTGTT 678 Query 213 ATTGCCTCAAACTTCC 228 |||||||||||||||| Sbjct 679 ATTGCCTCAAACTTCC 694 Score = 143 bits (158), Expect = 4e-32 Identities = 112/130 (86%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| |||||| |||||||||||| ||| | Sbjct 11015 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACCTGCGCTTACTAGGGATT-C 11072 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||| Sbjct 11073 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 11132 Query 120 ACCCGGACCT 129 |||||| ||| Sbjct 11133 ACCCGGGCCT 11142 >seq393 Length=2569 Score = 214 bits (236), Expect = 3e-53 Identities = 171/201 (85%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 2373 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 2430 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||| Sbjct 2431 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 2490 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 2491 CCCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 2548 Query 180 GCCCAGAACATCTAAGGGCAT 200 ||||||||||||||||||||| Sbjct 2549 GCCCAGAACATCTAAGGGCAT 2569 >seq59 Length=188496 Score = 205 bits (226), Expect = 1e-50 Identities = 185/227 (81%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| | ||||||| |||| ||| ||| |||||||||||| ||| || Sbjct 115386 TACAAAGGGCAGGGACATGATCAACGCAAGCT-GATAACTTGCGCTTACTAGGGATT-CC 115443 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 ||||| |||| ||| |||||||||| |||| ||| | ||||| | | | | | ||||||| Sbjct 115444 TCGTTAAAGAGCAATAATTGCAATGCTCTACCCCTAGCACGACGGAGTGTAACAAGATTA 115503 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||||| | || ||||| | | ||||| ||||||||||||| Sbjct 115504 CCCGGGCCTTCTGGCCAAG---AGAGTACTCGCTAGCTCTGTCAGTATAGCGCGCGTGCG 115560 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||| ||||||||||||||||||||||||||||| | |||||| Sbjct 115561 GCCCAGAATATCTAAGGGCATCACAGACCTGTTATTGCTTTAAACTT 115607 >seq137 Length=18433 Score = 201 bits (222), Expect = 2e-49 Identities = 149/172 (87%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116 |||||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||| Sbjct 15179 TTCCTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAG 15238 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||||| ||| ||||||||| || |||| || | | |||||||||||||||| Sbjct 15239 ATTACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGT 15296 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15297 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 15348 Score = 127 bits (140), Expect = 3e-27 Identities = 86/95 (91%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 135 CCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193 |||| ||| || ||||| || | | ||||||||||||||||||||||||||||||||| Sbjct 3726 CCAATGTGGGAGTACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 3785 Query 194 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||| Sbjct 3786 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3820 >seq383 Length=2678 Score = 192 bits (212), Expect = 9e-47 Identities = 144/167 (86%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 ||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||||| Sbjct 401 CGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATTAC 342 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 |||| ||| ||||||||| || |||| || | | ||||||||||||||||||||| Sbjct 341 CCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGC 284 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 237 Score = 127 bits (140), Expect = 3e-27 Identities = 87/97 (90%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 132 CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191 ||||||||| || |||| || | | ||||||||||||||||||||||||||||||| Sbjct 788 CGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATC 731 Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||| Sbjct 730 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 694 >seq135 Length=19661 Score = 176 bits (194), Expect = 7e-42 Identities = 149/177 (84%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 9872 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 9929 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||| Sbjct 9930 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 9989 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| ||| ||||||||| || ||||| || | | |||||||||||||||| Sbjct 9990 ACCCGGGCCTTCCGGCCAAGG-GA-GTACTCGCTGGCTCCGTCAGTGTAGCGCGCGT 10044 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| Sbjct 396 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996729035