Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq136 269 4e-70
seq80 223 5e-56
seq393 214 3e-53
seq59 205 1e-50
seq137 201 2e-49
seq383 192 9e-47
seq135 176 7e-42
>seq136
Length=18941
Score = 269 bits (298), Expect = 4e-70
Identities = 200/229 (87%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 7361 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 7418
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||
Sbjct 7419 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 7478
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | | |||||||||||||||||||
Sbjct 7479 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 7536
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7537 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 7585
Score = 123 bits (136), Expect = 4e-26
Identities = 87/97 (90%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 9093 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 9150
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCA 97
||||||||||| ||| |||||||||| ||| ||||||
Sbjct 9151 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCA 9187
>seq80
Length=128910
Score = 223 bits (246), Expect = 5e-56
Identities = 169/196 (86%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93
|||||||| |||||||||||| ||| |||||||||||| ||| |||||||||| ||| ||
Sbjct 502 TGATGACTTGCGCTTACTAGGGATT-CCTCGTTGAAGAGCAATAATTGCAATGCTCTGTC 560
Query 94 CCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT 152
|||| ||||| | | ||| | |||||||||||| ||| ||||||||| || ||||
Sbjct 561 CCCAGCACGACGGAGTTTAACAAGATTACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGC 618
Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212
|| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 619 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGCCCTGTT 678
Query 213 ATTGCCTCAAACTTCC 228
||||||||||||||||
Sbjct 679 ATTGCCTCAAACTTCC 694
Score = 143 bits (158), Expect = 4e-32
Identities = 112/130 (86%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| |||||| |||||||||||| ||| |
Sbjct 11015 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACCTGCGCTTACTAGGGATT-C 11072
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||
Sbjct 11073 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 11132
Query 120 ACCCGGACCT 129
|||||| |||
Sbjct 11133 ACCCGGGCCT 11142
>seq393
Length=2569
Score = 214 bits (236), Expect = 3e-53
Identities = 171/201 (85%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 2373 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 2430
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||
Sbjct 2431 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 2490
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| ||||||||| || |||| || | | |||||||||||||||||||
Sbjct 2491 CCCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 2548
Query 180 GCCCAGAACATCTAAGGGCAT 200
|||||||||||||||||||||
Sbjct 2549 GCCCAGAACATCTAAGGGCAT 2569
>seq59
Length=188496
Score = 205 bits (226), Expect = 1e-50
Identities = 185/227 (81%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| | ||||||| |||| ||| ||| |||||||||||| ||| ||
Sbjct 115386 TACAAAGGGCAGGGACATGATCAACGCAAGCT-GATAACTTGCGCTTACTAGGGATT-CC 115443
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
||||| |||| ||| |||||||||| |||| ||| | ||||| | | | | | |||||||
Sbjct 115444 TCGTTAAAGAGCAATAATTGCAATGCTCTACCCCTAGCACGACGGAGTGTAACAAGATTA 115503
Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| ||||||| | || ||||| | | ||||| |||||||||||||
Sbjct 115504 CCCGGGCCTTCTGGCCAAG---AGAGTACTCGCTAGCTCTGTCAGTATAGCGCGCGTGCG 115560
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226
|||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 115561 GCCCAGAATATCTAAGGGCATCACAGACCTGTTATTGCTTTAAACTT 115607
>seq137
Length=18433
Score = 201 bits (222), Expect = 2e-49
Identities = 149/172 (87%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116
|||||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||
Sbjct 15179 TTCCTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAG 15238
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||||||| ||| ||||||||| || |||| || | | ||||||||||||||||
Sbjct 15239 ATTACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGT 15296
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15297 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 15348
Score = 127 bits (140), Expect = 3e-27
Identities = 86/95 (91%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 135 CCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193
|||| ||| || ||||| || | | |||||||||||||||||||||||||||||||||
Sbjct 3726 CCAATGTGGGAGTACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 3785
Query 194 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||
Sbjct 3786 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3820
>seq383
Length=2678
Score = 192 bits (212), Expect = 9e-47
Identities = 144/167 (86%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121
||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||||
Sbjct 401 CGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATTAC 342
Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181
|||| ||| ||||||||| || |||| || | | |||||||||||||||||||||
Sbjct 341 CCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGC 284
Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 237
Score = 127 bits (140), Expect = 3e-27
Identities = 87/97 (90%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 132 CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191
||||||||| || |||| || | | |||||||||||||||||||||||||||||||
Sbjct 788 CGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATC 731
Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||
Sbjct 730 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 694
>seq135
Length=19661
Score = 176 bits (194), Expect = 7e-42
Identities = 149/177 (84%), Gaps = 5/177 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 9872 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 9929
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||
Sbjct 9930 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 9989
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
|||||| ||| ||||||||| || ||||| || | | ||||||||||||||||
Sbjct 9990 ACCCGGGCCTTCCGGCCAAGG-GA-GTACTCGCTGGCTCCGTCAGTGTAGCGCGCGT 10044
Score = 75.2 bits (82), Expect = 2e-11
Identities = 41/41 (100%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751996729035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |