Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq266 172 3e-41 seq198 172 3e-41 seq147 172 3e-41 seq136 172 3e-41 seq135 172 3e-41 seq137 141 5e-32 seq80 82.4 4e-14 >seq266 Length=5848 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 5396 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 5338 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5337 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 5281 >seq198 Length=9641 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 7228 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 7170 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 7169 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 7113 Score = 167 bits (184), Expect = 1e-39 Identities = 108/117 (92%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 9270 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 9212 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 9211 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGGATCTGATCGTCTTCGA 9155 >seq147 Length=16219 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 11401 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 11343 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11342 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 11286 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 11712 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 11654 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11653 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 11597 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 12903 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 12845 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 12844 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 12788 Score = 127 bits (140), Expect = 1e-27 Identities = 84/92 (91%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 12016 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 11958 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGAC 92 |||||||||||||||||||||| ||||||||| Sbjct 11957 GATCCCTAGTCGGCATAGTTTATGGTTAAGAC 11926 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1630 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAA-AATAACATCGTCC 1572 Query 61 GA 62 || Sbjct 1571 GA 1570 >seq136 Length=18941 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 10359 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 10417 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 10418 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 10474 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 11338 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 11396 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11397 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 11453 Score = 141 bits (156), Expect = 5e-32 Identities = 88/93 (95%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 25 TAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACG 84 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 14676 TAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCCGATCCCTAGTCGGCATAGTTTATG 14734 Query 85 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||||||||| Sbjct 14735 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 14767 >seq135 Length=19661 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1281 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 1339 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1340 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1396 Score = 86.0 bits (94), Expect = 3e-15 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 68 AGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 18049 AGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 18098 >seq137 Length=18433 Score = 141 bits (156), Expect = 5e-32 Identities = 88/93 (95%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 25 TAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACG 84 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 12955 TAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCCGATCCCTAGTCGGCATAGTTTATG 13013 Query 85 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||||||||| Sbjct 13014 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 13046 Score = 141 bits (156), Expect = 5e-32 Identities = 88/93 (95%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 25 TAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACG 84 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13304 TAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCCGATCCCTAGTCGGCATAGTTTATG 13362 Query 85 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||||||||| Sbjct 13363 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 13395 Score = 141 bits (156), Expect = 5e-32 Identities = 88/93 (95%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 25 TAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACG 84 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13653 TAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCCGATCCCTAGTCGGCATAGTTTATG 13711 Query 85 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||||||||| Sbjct 13712 GTTAAGACTACGACGGTATCTGATCGTCTTCGA 13744 Score = 86.0 bits (94), Expect = 3e-15 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 68 AGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 12648 AGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 12697 Score = 78.8 bits (86), Expect = 5e-13 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 72 GGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4765 GGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 4810 Score = 73.4 bits (80), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 2/49 (4%) Strand=Plus/Plus Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 11064 GTCGG--TAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 11110 >seq80 Length=128910 Score = 82.4 bits (90), Expect = 4e-14 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1568 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAA-AATAACATCGTCC 1626 Query 61 GATCC 65 ||||| Sbjct 1627 GATCC 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278398828110