Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq266 154 2e-35 seq198 154 2e-35 seq137 154 2e-35 seq136 154 2e-35 seq80 140 4e-31 seq135 111 2e-22 seq397 100 3e-19 seq147 100 3e-19 >seq266 Length=5848 Score = 154 bits (170), Expect = 2e-35 Identities = 153/193 (79%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 5137 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 5078 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCG-C 124 || || |||||| | || |||||||||||| |||| ||||||||||| ||||| ||| | Sbjct 5077 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCT-GTTCCCCCGCC 5019 Query 125 ACA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGC 182 ||| ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 5018 ACACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGC 4959 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 4958 GGTGAGGCGGACC 4946 >seq198 Length=9641 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 6969 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 6910 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 6909 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 6850 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 6849 CACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 6790 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 6789 GTGAGGCGGACC 6778 Score = 120 bits (132), Expect = 4e-25 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 697 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 638 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGT 104 || || |||||| | || |||||||||||| |||| || Sbjct 637 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGT 599 >seq137 Length=18433 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 175 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 234 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 235 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 294 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 295 CACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 354 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 355 GTGAGGCGGACC 366 Score = 150 bits (166), Expect = 2e-34 Identities = 114/133 (86%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 4954 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 5013 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 5014 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 5073 Query 126 CA-CCAATGAAGG 137 || ||| |||||| Sbjct 5074 CACCCAGTGAAGG 5086 Score = 127 bits (140), Expect = 2e-27 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 16485 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 16544 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 || || |||||| | || |||||||||||| |||| |||||| Sbjct 16545 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAA 16587 Score = 118 bits (130), Expect = 1e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 32 CGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTA 91 ||||||||| ||||||||||||||||||||||| || || |||||| | || ||||||| Sbjct 8492 CGTCCTATTTCATTATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACTCTA 8551 Query 92 ATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA-CCAATGAAGG 137 ||||| |||| |||||||||||| |||| | |||| ||| |||||| Sbjct 8552 ATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCACACCCAGTGAAGG 8598 Score = 102 bits (112), Expect = 1e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 28 CGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACAC 87 ||||||||||||| ||||||||||||||||||||||| || || |||||| | || ||| Sbjct 11512 CGCACGTCCTATTTCATTATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCAC 11571 Query 88 TCTAATTTTCTCAAGGTAAAA 108 ||||||||| |||| |||||| Sbjct 11572 TCTAATTTTTTCAAAGTAAAA 11592 >seq136 Length=18941 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 622 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 681 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 682 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 741 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 742 CACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 801 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 802 GTGAGGCGGACC 813 Score = 105 bits (116), Expect = 8e-21 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 14320 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 14379 Query 66 GGCGTAAGCCTGCTTTGAACACTCTA 91 || || |||||| | || ||||||| Sbjct 14380 AGCATAGGCCTGCCTGGAGCACTCTA 14405 >seq80 Length=128910 Score = 140 bits (154), Expect = 4e-31 Identities = 98/112 (88%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 8583 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 8642 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTT 117 || || |||||| | || |||||||||||| |||| |||||||||||| || Sbjct 8643 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTT 8694 >seq135 Length=19661 Score = 111 bits (122), Expect = 2e-22 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 43 ATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAG 102 ||||||||||||||||||||||| || || |||||| | || |||||||||||| |||| Sbjct 1628 ATTATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAA 1687 Query 103 GTAAAAGTCCTGGTTCCTCCGCACA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAG 160 |||||||||||| |||| | |||| ||| |||| ||||| || ||| || | || Sbjct 1688 GTAAAAGTCCTGTTTCCCCGCCACACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAG 1747 Query 161 GGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195 | | || |||| | ||| |||||||||||| Sbjct 1748 GCCCGGCCGGACCAGTGCACGCGGTGAGGCGGACC 1782 >seq397 Length=2477 Score = 100 bits (110), Expect = 3e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 616 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 675 Query 66 GGCGTAAGCCTGCTTTGAACACT 88 || || |||||| | || |||| Sbjct 676 AGCATAGGCCTGCCTGGAGCACT 698 Score = 73.4 bits (80), Expect = 5e-11 Identities = 98/134 (73%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 64 CGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCG 123 || || || |||||| | || |||||||||||| |||| |||||||||||| |||| | Sbjct 913 CGAGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGC 972 Query 124 CACA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCG 181 |||| ||| |||| ||||| || ||| || | ||| | || |||| | || Sbjct 973 CACACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACG 1032 Query 182 CCGTGAGGCGGACC 195 | |||||||||||| Sbjct 1033 CGGTGAGGCGGACC 1046 >seq147 Length=16219 Score = 100 bits (110), Expect = 3e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 15702 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 15643 Query 66 GGCGTAAGCCTGCTTTGAACACT 88 || || |||||| | || |||| Sbjct 15642 AGCATAGGCCTGCCTGGAGCACT 15620 Score = 84.2 bits (92), Expect = 3e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 4940 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTC 4882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595197411066