Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq198 264 1e-68
seq137 264 1e-68
seq266 260 1e-67
seq80 253 2e-65
seq136 233 2e-59
seq397 214 2e-53
seq147 208 8e-52
seq135 174 2e-41
seq37 156 4e-36
>seq198
Length=9641
Score = 264 bits (292), Expect = 1e-68
Identities = 174/191 (91%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 6856 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 6915
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 6916 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 6974
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 6975 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 7034
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 7035 TTGGATTTATT 7045
Score = 242 bits (268), Expect = 4e-62
Identities = 160/176 (91%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 16 ACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATA 75
|||||||||||||||||| | || | |||||||| ||||||||||||||| |||||||||
Sbjct 599 ACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATA 658
Query 76 ATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATA 135
|| ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 659 ATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATA 717
Query 136 CGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191
||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 GGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 773
>seq137
Length=18433
Score = 264 bits (292), Expect = 1e-68
Identities = 174/191 (91%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 5067 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 5008
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 5007 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 4949
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 4948 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 4889
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 4888 TTGGATTTATT 4878
Score = 250 bits (276), Expect = 3e-64
Identities = 164/180 (91%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71
|||||||||||||||||||||| | || | |||||||| ||||||||||||||| |||||
Sbjct 16587 TTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGG 16528
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 16527 AATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATT 16469
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191
|||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 16468 AATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 16409
Score = 181 bits (200), Expect = 1e-43
Identities = 119/130 (92%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 288 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 229
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 228 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 170
Query 121 CCGTAATGAT 130
||||||||||
Sbjct 169 CCGTAATGAT 160
Score = 123 bits (136), Expect = 3e-26
Identities = 80/88 (91%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71
|||||||||||||||||||||| | || | |||||||| ||||||||||||||| |||||
Sbjct 11592 TTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGG 11533
Query 72 AATAATAGAATAGGACGTGCGGTTCTAT 99
|||||| ||||||||||||||||||||
Sbjct 11532 AATAATGAAATAGGACGTGCGGTTCTAT 11505
Score = 118 bits (130), Expect = 1e-24
Identities = 79/88 (90%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 8579 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 8520
Query 61 CATTACCATGGAATAATAGAATAGGACG 88
||||| ||||||||||| |||||||||
Sbjct 8519 CATTAGCATGGAATAATGAAATAGGACG 8492
>seq266
Length=5848
Score = 260 bits (288), Expect = 1e-67
Identities = 174/191 (91%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||| ||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 5025 GGAAC-AGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 5083
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 5084 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 5142
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 5143 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 5202
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 5203 TTGGATTTATT 5213
>seq80
Length=128910
Score = 253 bits (280), Expect = 2e-65
Identities = 168/185 (91%), Gaps = 1/185 (1%)
Strand=Plus/Minus
Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62
|| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||||
Sbjct 8694 AAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 8635
Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122
||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 8634 TTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CC 8576
Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182
|||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 8575 GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 8516
Query 183 GGATT 187
|||||
Sbjct 8515 GGATT 8511
Score = 154 bits (170), Expect = 2e-35
Identities = 99/107 (93%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 85 GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTC 144
|||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| ||||
Sbjct 8322 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTC 8264
Query 145 GGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191
||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 8263 GGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 8217
>seq136
Length=18941
Score = 233 bits (258), Expect = 2e-59
Identities = 163/183 (89%), Gaps = 3/183 (2%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 735 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 676
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 675 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 617
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| || |||| ||
Sbjct 616 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAG--GAAACTC 559
Query 181 TTG 183
|||
Sbjct 558 TTG 556
Score = 143 bits (158), Expect = 3e-32
Identities = 101/114 (89%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 29 TAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACG 88
||||| | || | |||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 14405 TAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACG 14346
Query 89 TGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAG 142
|||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||
Sbjct 14345 TGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACAG 14293
>seq397
Length=2477
Score = 214 bits (236), Expect = 2e-53
Identities = 138/150 (92%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 42 GCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 101
|||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 688 GCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTT 629
Query 102 TGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161
||| |||||||||||||| |||||||||| |||| ||| ||||||||| ||||||||||
Sbjct 628 TGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCA 570
Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTATT 191
||||||| ||||||||||||||||||||||
Sbjct 569 ATTGTCAGAGGTGAAATTCTTGGATTTATT 540
Score = 75.2 bits (82), Expect = 1e-11
Identities = 50/56 (89%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG 56
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||
Sbjct 968 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCG 913
>seq147
Length=16219
Score = 208 bits (230), Expect = 8e-52
Identities = 137/150 (91%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 42 GCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 101
|||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 15630 GCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTT 15689
Query 102 TGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161
||| |||||||||| ||| |||||||||| |||| ||| ||||||||| ||||||||||
Sbjct 15690 TGTTGGTTTCTAGGCCCG-CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCA 15748
Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTATT 191
||||||| ||||||||||||||||||||||
Sbjct 15749 ATTGTCAGAGGTGAAATTCTTGGATTTATT 15778
Score = 188 bits (208), Expect = 7e-46
Identities = 124/136 (91%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 56 GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG 115
|||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 4882 GAATACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 4941
Query 116 ACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175
|||| |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||| ||
Sbjct 4942 ACCG-CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGGGA 5000
Query 176 AATTCTTGGATTTATT 191
||||||||||||||||
Sbjct 5001 AATTCTTGGATTTATT 5016
Score = 93.3 bits (102), Expect = 4e-17
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182
||| |||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 11150 GTATTGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 11209
Query 183 GGATTTATT 191
|||||||||
Sbjct 11210 GGATTTATT 11218
>seq135
Length=19661
Score = 174 bits (192), Expect = 2e-41
Identities = 113/123 (92%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 18287 TGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC-GTAATG 18229
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| |||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 18228 ATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 18169
Query 189 ATT 191
|||
Sbjct 18168 ATT 18166
Score = 107 bits (118), Expect = 2e-21
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 1704 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 1645
Query 61 CATTACCATGGAATAAT 77
||||| |||||||||||
Sbjct 1644 CATTAGCATGGAATAAT 1628
Score = 98.7 bits (108), Expect = 1e-18
Identities = 63/69 (91%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182
|||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1532 GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 1473
Query 183 GGATTTATT 191
|||||||||
Sbjct 1472 GGATTTATT 1464
>seq37
Length=341418
Score = 156 bits (172), Expect = 4e-36
Identities = 150/191 (79%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| | |||||||||||| |||||||||||| | || | | |||||| | || ||||
Sbjct 282943 GGAAATAAGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATACTTAAATA 283002
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||| |||| || | |||||||||| | |||| || |||||
Sbjct 283003 TATTAGTATAGAATAATAAAATAAGATATATAGTTCTATTTTATTAGTTTTTAAGACCG- 283061
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
||||||| || |||| ||||| ||||||| | |||||| |||| | |||||||||||||
Sbjct 283062 CCGTAATAATTAATAGGGATAATCGGGGGCATTAGTATTTAATTATTAAAGGTGAAATTC 283121
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 283122 TTAGATTTATT 283132
Score = 134 bits (148), Expect = 1e-29
Identities = 145/191 (76%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||| ||||||||| ||||||||| | | | ||| || | | ||||||||
Sbjct 321891 GGAAATAGGATTTTTACTTTAAAAAAATTAAAATACTTTAGGCAAGCTTATACTCGAATA 321950
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || ||||||| |||||||||| |||||||||||| | |||||||||||||
Sbjct 321951 TATTAGTATAAAATAATAAAATAGGACGTACGGTTCTATTTTATTAGTTTCTAGGACCG- 322009
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||| | | || | | |||| |||| | | |||| ||||||
Sbjct 322010 CTATAATAATTAATAGGGATAATTAGAGGCATTAATATTTAATTATTAGAGGTAAAATTC 322069
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 322070 TTAGATTTATT 322080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511997772960
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