Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq198 264 1e-68 seq137 264 1e-68 seq266 260 1e-67 seq80 253 2e-65 seq136 233 2e-59 seq397 214 2e-53 seq147 208 8e-52 seq135 174 2e-41 seq37 156 4e-36 >seq198 Length=9641 Score = 264 bits (292), Expect = 1e-68 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 6856 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 6915 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 6916 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 6974 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 6975 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 7034 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 7035 TTGGATTTATT 7045 Score = 242 bits (268), Expect = 4e-62 Identities = 160/176 (91%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 16 ACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATA 75 |||||||||||||||||| | || | |||||||| ||||||||||||||| ||||||||| Sbjct 599 ACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATA 658 Query 76 ATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATA 135 || ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| Sbjct 659 ATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATA 717 Query 136 CGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 718 GGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 773 >seq137 Length=18433 Score = 264 bits (292), Expect = 1e-68 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 5067 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 5008 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 5007 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 4949 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 4948 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 4889 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 4888 TTGGATTTATT 4878 Score = 250 bits (276), Expect = 3e-64 Identities = 164/180 (91%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71 |||||||||||||||||||||| | || | |||||||| ||||||||||||||| ||||| Sbjct 16587 TTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGG 16528 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 16527 AATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATT 16469 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 |||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 16468 AATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 16409 Score = 181 bits (200), Expect = 1e-43 Identities = 119/130 (92%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 288 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 229 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 228 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 170 Query 121 CCGTAATGAT 130 |||||||||| Sbjct 169 CCGTAATGAT 160 Score = 123 bits (136), Expect = 3e-26 Identities = 80/88 (91%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71 |||||||||||||||||||||| | || | |||||||| ||||||||||||||| ||||| Sbjct 11592 TTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGG 11533 Query 72 AATAATAGAATAGGACGTGCGGTTCTAT 99 |||||| |||||||||||||||||||| Sbjct 11532 AATAATGAAATAGGACGTGCGGTTCTAT 11505 Score = 118 bits (130), Expect = 1e-24 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 8579 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 8520 Query 61 CATTACCATGGAATAATAGAATAGGACG 88 ||||| ||||||||||| ||||||||| Sbjct 8519 CATTAGCATGGAATAATGAAATAGGACG 8492 >seq266 Length=5848 Score = 260 bits (288), Expect = 1e-67 Identities = 174/191 (91%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||| ||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 5025 GGAAC-AGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 5083 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 5084 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 5142 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 5143 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 5202 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 5203 TTGGATTTATT 5213 >seq80 Length=128910 Score = 253 bits (280), Expect = 2e-65 Identities = 168/185 (91%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62 || |||||||||||||||||||||||||||| | || | |||||||| |||||||||||| Sbjct 8694 AAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 8635 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| || Sbjct 8634 TTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CC 8576 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 8575 GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 8516 Query 183 GGATT 187 ||||| Sbjct 8515 GGATT 8511 Score = 154 bits (170), Expect = 2e-35 Identities = 99/107 (93%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 85 GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTC 144 |||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| |||| Sbjct 8322 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTC 8264 Query 145 GGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 8263 GGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 8217 >seq136 Length=18941 Score = 233 bits (258), Expect = 2e-59 Identities = 163/183 (89%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 735 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 676 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 675 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 617 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| || |||| || Sbjct 616 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAG--GAAACTC 559 Query 181 TTG 183 ||| Sbjct 558 TTG 556 Score = 143 bits (158), Expect = 3e-32 Identities = 101/114 (89%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 29 TAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACG 88 ||||| | || | |||||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct 14405 TAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACG 14346 Query 89 TGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAG 142 |||||||||||||||| |||||||||||||| |||||||||| |||| ||| || Sbjct 14345 TGCGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACAG 14293 >seq397 Length=2477 Score = 214 bits (236), Expect = 2e-53 Identities = 138/150 (92%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 42 GCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 101 |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 688 GCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTT 629 Query 102 TGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161 ||| |||||||||||||| |||||||||| |||| ||| ||||||||| |||||||||| Sbjct 628 TGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCA 570 Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||||||| |||||||||||||||||||||| Sbjct 569 ATTGTCAGAGGTGAAATTCTTGGATTTATT 540 Score = 75.2 bits (82), Expect = 1e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG 56 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||| Sbjct 968 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCG 913 >seq147 Length=16219 Score = 208 bits (230), Expect = 8e-52 Identities = 137/150 (91%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 42 GCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 101 |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 15630 GCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTT 15689 Query 102 TGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161 ||| |||||||||| ||| |||||||||| |||| ||| ||||||||| |||||||||| Sbjct 15690 TGTTGGTTTCTAGGCCCG-CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCA 15748 Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||||||| |||||||||||||||||||||| Sbjct 15749 ATTGTCAGAGGTGAAATTCTTGGATTTATT 15778 Score = 188 bits (208), Expect = 7e-46 Identities = 124/136 (91%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 56 GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG 115 |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 4882 GAATACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 4941 Query 116 ACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175 |||| |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||| || Sbjct 4942 ACCG-CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGGGA 5000 Query 176 AATTCTTGGATTTATT 191 |||||||||||||||| Sbjct 5001 AATTCTTGGATTTATT 5016 Score = 93.3 bits (102), Expect = 4e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 ||| |||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 11150 GTATTGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 11209 Query 183 GGATTTATT 191 ||||||||| Sbjct 11210 GGATTTATT 11218 >seq135 Length=19661 Score = 174 bits (192), Expect = 2e-41 Identities = 113/123 (92%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 18287 TGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC-GTAATG 18229 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 18228 ATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 18169 Query 189 ATT 191 ||| Sbjct 18168 ATT 18166 Score = 107 bits (118), Expect = 2e-21 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 1704 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 1645 Query 61 CATTACCATGGAATAAT 77 ||||| ||||||||||| Sbjct 1644 CATTAGCATGGAATAAT 1628 Score = 98.7 bits (108), Expect = 1e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1532 GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT 1473 Query 183 GGATTTATT 191 ||||||||| Sbjct 1472 GGATTTATT 1464 >seq37 Length=341418 Score = 156 bits (172), Expect = 4e-36 Identities = 150/191 (79%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| | |||||||||||| |||||||||||| | || | | |||||| | || |||| Sbjct 282943 GGAAATAAGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATACTTAAATA 283002 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||| |||| || | |||||||||| | |||| || ||||| Sbjct 283003 TATTAGTATAGAATAATAAAATAAGATATATAGTTCTATTTTATTAGTTTTTAAGACCG- 283061 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||| || |||| ||||| ||||||| | |||||| |||| | ||||||||||||| Sbjct 283062 CCGTAATAATTAATAGGGATAATCGGGGGCATTAGTATTTAATTATTAAAGGTGAAATTC 283121 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 283122 TTAGATTTATT 283132 Score = 134 bits (148), Expect = 1e-29 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||| ||||||||| ||||||||| | | | ||| || | | |||||||| Sbjct 321891 GGAAATAGGATTTTTACTTTAAAAAAATTAAAATACTTTAGGCAAGCTTATACTCGAATA 321950 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || ||||||| |||||||||| |||||||||||| | ||||||||||||| Sbjct 321951 TATTAGTATAAAATAATAAAATAGGACGTACGGTTCTATTTTATTAGTTTCTAGGACCG- 322009 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||| | | || | | |||| |||| | | |||| |||||| Sbjct 322010 CTATAATAATTAATAGGGATAATTAGAGGCATTAATATTTAATTATTAGAGGTAAAATTC 322069 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 322070 TTAGATTTATT 322080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511997772960