Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 365 4e-96 seq1 149 5e-31 >seq2 Length=1075658 Score = 365 bits (404), Expect = 4e-96 Identities = 1205/1845 (65%), Gaps = 74/1845 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCC-AGCA--CGCCAAGCATAGAAATGCATCGATGATAAT 65179 ||||||||||| |||||||| || ||| | || ||| || |||||||| | | || Sbjct 440793 TAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACG-TGAT 440848 Query 65180 TTTGC--ATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAAC 65237 |||| || || || || || || || || | ||||| ||| ||||| | Sbjct 440849 CTTGCCCATGGTTGGG-TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGG 440907 Query 65238 GACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGT 65297 ||| || || || ||||| | | | | |||| ||| || |||||||| ||||||| Sbjct 440908 CACCGCGGTCGGCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGT 440967 Query 65298 ACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA 65357 |||| |||||| ||||| | |||| ||||| || || |||| Sbjct 440968 ACAGAGCCTTTACCTCGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAA 441027 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAG 65416 | |||||||| ||| | |||||||||| ||||| |||| |||| |||| ||| Sbjct 441028 TGATGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAG--AAG 441085 Query 65417 TGACGA-TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 | | |||| ||| ||||||||||| | ||| || || || || ||||||||||| Sbjct 441086 CCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGT 441145 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | ||| || ||| | || ||||||| ||||| || | || || || || |||||||| Sbjct 441146 GTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGG 441205 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGT--TCATTTCAATGTTG--TGACGCAATTCGT 65591 |||| || || ||||| || | |||| || || || | ||| | ||| Sbjct 441206 CGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAAT---- 441261 Query 65592 CCCAGTTCCACA--TCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||| | ||||| |||| || | || ||| |||||| || |||||| | Sbjct 441262 CCCACTCCCACAAGTCGGA-------CGGCGTC-ACGTTCCACATGTCAAACTGCAGGAT 441313 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || | |||||| || || ||| | ||| |||||||||||||| || | Sbjct 441314 GCCTTCAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC 441373 Query 65710 -ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | | || || ||||| || |||||||| ||||| | || || || | Sbjct 441374 CACCGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGC 441432 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAA 65828 | ||||| ||| | ||||| | | | | || | |||||||| ||||||| Sbjct 441433 GAGCCTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAA 441492 Query 65829 CTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGT 65888 | || | ||| ||||||||||| |||| ||| | || || | || ||||||| Sbjct 441493 CACCGACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGT 441552 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAA 65946 |||| ||||| || || | ||| || ||||| || | |||||| || Sbjct 441553 GGTTGACGTCGATGATCTTGTTGAGATTTCGGACAACCAC--GCGGGTGACGTCGTGCAG 441610 Query 65947 TTGTTCGAAATCAAAAT-GTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAA 66005 | || ||| || | | | | || || ||| ||||||| ||| | Sbjct 441611 CTTTTGGAAGTCGTACTTGCCTTGGTCGT-----AGT--------CCACAAAGGCGGGCA 441657 Query 66006 GGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTT 66065 ||||||| || || ||||||||||| || | |||||| || || | ||||||| ||| | Sbjct 441658 GGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCT 441717 Query 66066 CGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGC 66125 ||||||| || || || ||| ||||| ||||| |||| || || ||||| | |||| Sbjct 441718 CGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGC 441777 Query 66126 ATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGT 66185 | ||||||||||| ||| | || |||| ||||| || | ||| | ||| | || Sbjct 441778 AATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGT 441837 Query 66186 GCCAAAGA----GCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATG 66240 ||| || | ||| | || || | | | ||| | |||| ||| ||||| | Sbjct 441838 ACCACAGCTTCTGGGCGCGGATT----GT-CTTGCGGCCACGGCCTTCGCGCTCGTACTT 441892 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||| || | || || || || | |||| || | || || | || || Sbjct 441893 TTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGG 441952 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| || | ||| || |||| || || ||||| ||| || || || || ||||| Sbjct 441953 GCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 442012 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 || || |||||| ||||| || || ||||| ||||||| || || | | || Sbjct 442013 CAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATC 442072 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||||| ||||| ||||| || ||||||||||||||||| | |||| || Sbjct 442073 AAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCG 442132 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| ||| |||||||||||||| | || ||||||||||| |||| ||| || || Sbjct 442133 CTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAAC 442192 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 || ||||| || |||| ||||||||| | ||| |||||| || || || ||| Sbjct 442193 GACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTG 442252 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTC 66658 || ||||| || ||||| |||||| | || || || || ||| || | | |||| Sbjct 442253 GACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTC 442312 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| || ||| ||| |||| ||| | |||| |||| || ||| || Sbjct 442313 --GTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGA 442370 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 | || ||| | || ||||||||| |||| ||||| || ||| | | | ||| Sbjct 442371 CACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGAC 442430 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838 ||| ||||| || || | ||| |||||||| || || || |||| ||| Sbjct 442431 ATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACA 442490 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTA 66894 ||||| | | || ||||| |||||||| | |||| ||| | | || | || Sbjct 442491 CGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCG-TCC---AGCTTCAGGAGATA 442546 Query 66895 GGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || || ||||| ||||||| |||||||||| || ||||| || Sbjct 442547 CGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTC 442591 >seq1 Length=2302571 Score = 149 bits (164), Expect = 5e-31 Identities = 236/334 (71%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | || ||| | || || Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402 Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || || | |||||| | | | | ||| || |||| | |||||||| Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGA-CGATGAAAAGTATTTCATTTC 1624461 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | ||||| |||||||| || ||||| || |||||||| || || | | || || Sbjct 1624462 TCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCG 1624521 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | |||||||| || | || || |||||||||||||| |||||||| | Sbjct 1624522 GTTCA-GCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGA 1624580 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||||||| |||| || |||| ||| | | | ||||| ||||| |||| ||||| | Sbjct 1624581 TGGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGAGCACG 1624640 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415 || | || | | ||||||||||| || || Sbjct 1624641 CGCAGCGAAATTACCTCTTCAATGCCATTGAAAC 1624674 Score = 120 bits (132), Expect = 2e-22 Identities = 297/446 (67%), Gaps = 5/446 (1%) Strand=Plus/Plus Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 |||||||| | || || || | |||||||| | || |||||||| | || || | | Sbjct 1624812 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCA 1624871 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||||||| | ||||| || || || |||||||| || |||||| || || | |||| Sbjct 1624872 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATAT 1624931 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA 61666 | || |||||||| |||| || ||||| |||| || | | |||| | Sbjct 1624932 CCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTG--CACTCTC-ATCTCAAGC 1624988 Query 61667 ATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGG 61726 | | | || | | || || | || || || || || || || | Sbjct 1624989 AAAGAGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAG 1625048 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 | || ||||| || ||| |||| | | || |||||||||| | ||| ||| || Sbjct 1625049 ATTTCCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTGATGAAGC 1625108 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTAT 61845 | || || ||||| ||||||||||| |||||||| | | | ||| ||||| || | || Sbjct 1625109 AATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGG-TGTAC 1625167 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 || || || || |||||||| ||||| | || || |||| ||||||||| || ||| Sbjct 1625168 AAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTT 1625227 Query 61906 TTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||| || || || || || || Sbjct 1625228 TTTGAGAAGCGAGTTGGTGAATACCA 1625253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565824433360