Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq3 156 2e-32 >seq3 Length=991023 Score = 156 bits (172), Expect = 2e-32 Identities = 151/192 (79%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 349026 GCCTGACGAGGTAGACCGACGCATTGGGCTTCTTCATCT--TGGGCGTGGCGTCGAGAAT 349083 || || ||||||| || | | ||||| |||| || | | ||| || | ||| || Sbjct 311352 GCGTGTCGAGGTACACGGCCATGCTGGGCGTCTTGATGTCCTTGGCCAGG--TTGAGGAT 311409 Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| ||| ||||| |||||||||| || |||||||||||||||||| Sbjct 311410 CTCCTTGAGCCGGGGCACGCCGAGGGTGACGTTCTTGGACGAGACGCCGGCAAAGTGGAA 311469 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 || | ||| |||| ||||||| ||||||||||||| |||| | ||||||| ||| || Sbjct 311470 CGTGTTGAGCGTCATCTGCGTGGCGGGCTCGCCGATGGACTGCGCGGCGAGGACGCCGAC 311529 Query 349204 CATCTCGCCGGG 349215 |||||||||||| Sbjct 311530 CATCTCGCCGGG 311541 Score = 120 bits (132), Expect = 1e-21 Identities = 130/172 (76%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 |||||||||||||||||||||||||||||||| ||||||||| |||| | || | | Sbjct 313275 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCGACGTGACCGACAGGTTCAGGCGAAACG 313334 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 | || | || | ||| |||||||| |||| |||||| | ||||| |||| || Sbjct 313335 TCGAGTACGGCATGACGCG---GACGCGGTGGCCCATCATGGACTCCTTGTGCAGCGAGG 313391 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTT 351273 |||| || ||| ||||||| |||||| || || ||||| ||||||||| Sbjct 313392 GCTGCCGGTTGAAGATGATGTAGTCGCCGTCCATCAGGTGCCGCTCCACCTT 313443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084726914371302