Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 2e-32
>seq3
Length=991023
Score = 156 bits (172), Expect = 2e-32
Identities = 151/192 (79%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 349026 GCCTGACGAGGTAGACCGACGCATTGGGCTTCTTCATCT--TGGGCGTGGCGTCGAGAAT 349083
|| || ||||||| || | | ||||| |||| || | | ||| || | ||| ||
Sbjct 311352 GCGTGTCGAGGTACACGGCCATGCTGGGCGTCTTGATGTCCTTGGCCAGG--TTGAGGAT 311409
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
||||||||| | ||||| ||| ||||| |||||||||| || ||||||||||||||||||
Sbjct 311410 CTCCTTGAGCCGGGGCACGCCGAGGGTGACGTTCTTGGACGAGACGCCGGCAAAGTGGAA 311469
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203
|| | ||| |||| ||||||| ||||||||||||| |||| | ||||||| ||| ||
Sbjct 311470 CGTGTTGAGCGTCATCTGCGTGGCGGGCTCGCCGATGGACTGCGCGGCGAGGACGCCGAC 311529
Query 349204 CATCTCGCCGGG 349215
||||||||||||
Sbjct 311530 CATCTCGCCGGG 311541
Score = 120 bits (132), Expect = 1e-21
Identities = 130/172 (76%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161
|||||||||||||||||||||||||||||||| ||||||||| |||| | || | |
Sbjct 313275 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCGACGTGACCGACAGGTTCAGGCGAAACG 313334
Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221
| || | || | ||| |||||||| |||| |||||| | ||||| |||| ||
Sbjct 313335 TCGAGTACGGCATGACGCG---GACGCGGTGGCCCATCATGGACTCCTTGTGCAGCGAGG 313391
Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTT 351273
|||| || ||| ||||||| |||||| || || ||||| |||||||||
Sbjct 313392 GCTGCCGGTTGAAGATGATGTAGTCGCCGTCCATCAGGTGCCGCTCCACCTT 313443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084726914371302
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |