Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq14 269 4e-70 seq60 205 1e-50 >seq14 Length=615434 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 7298 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 7355 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||| Sbjct 7356 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 7415 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 7416 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 7473 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7474 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 7522 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 15888 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 15945 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | |||||| Sbjct 15946 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 16005 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 16006 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 16063 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16064 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 16112 >seq60 Length=154011 Score = 205 bits (226), Expect = 1e-50 Identities = 185/227 (81%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| | ||||||| |||| ||| ||| |||||||||||| ||| || Sbjct 78757 TACAAAGGGCAGGGACATGATCAACGCAAGCT-GATAACTTGCGCTTACTAGGGATT-CC 78814 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 ||||| |||| ||| |||||||||| |||| ||| | ||||| | | | | | ||||||| Sbjct 78815 TCGTTAAAGAGCAATAATTGCAATGCTCTACCCCTAGCACGACGGAGTGTAACAAGATTA 78874 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||||| | || ||||| | | ||||| ||||||||||||| Sbjct 78875 CCCGGGCCTTCTGGCCAAG---AGAGTACTCGCTAGCTCTGTCAGTATAGCGCGCGTGCG 78931 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||| ||||||||||||||||||||||||||||| | |||||| Sbjct 78932 GCCCAGAATATCTAAGGGCATCACAGACCTGTTATTGCTTTAAACTT 78978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998987385