Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq14 269 4e-70
seq60 205 1e-50
>seq14
Length=615434
Score = 269 bits (298), Expect = 4e-70
Identities = 200/229 (87%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 7298 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 7355
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||
Sbjct 7356 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 7415
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | | |||||||||||||||||||
Sbjct 7416 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 7473
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7474 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 7522
Score = 269 bits (298), Expect = 4e-70
Identities = 200/229 (87%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 15888 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 15945
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| ||| |||||| ||||| | | ||| | ||||||
Sbjct 15946 CTCGTTGAAGAGCAATAATTGCAATGCTCTGTCCCCAGCACGACGGAGTTTAACAAGATT 16005
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | | |||||||||||||||||||
Sbjct 16006 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 16063
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16064 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 16112
>seq60
Length=154011
Score = 205 bits (226), Expect = 1e-50
Identities = 185/227 (81%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| | ||||||| |||| ||| ||| |||||||||||| ||| ||
Sbjct 78757 TACAAAGGGCAGGGACATGATCAACGCAAGCT-GATAACTTGCGCTTACTAGGGATT-CC 78814
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
||||| |||| ||| |||||||||| |||| ||| | ||||| | | | | | |||||||
Sbjct 78815 TCGTTAAAGAGCAATAATTGCAATGCTCTACCCCTAGCACGACGGAGTGTAACAAGATTA 78874
Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| ||||||| | || ||||| | | ||||| |||||||||||||
Sbjct 78875 CCCGGGCCTTCTGGCCAAG---AGAGTACTCGCTAGCTCTGTCAGTATAGCGCGCGTGCG 78931
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226
|||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 78932 GCCCAGAATATCTAAGGGCATCACAGACCTGTTATTGCTTTAAACTT 78978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751998987385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |