Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq14 473 2e-131
seq24 259 9e-67
>seq14
Length=615434
Score = 473 bits (524), Expect = 2e-131
Identities = 294/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 8739 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 8680
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 8679 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 8620
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8619 TAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 8560
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 8559 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 8500
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 8499 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 8441
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 8440 ACGAAAGTTAGGGG 8427
Score = 473 bits (524), Expect = 2e-131
Identities = 294/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 17329 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 17270
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 17269 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 17210
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17209 TAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 17150
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 17149 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 17090
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 17089 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 17031
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 17030 ACGAAAGTTAGGGG 17017
Score = 208 bits (230), Expect = 1e-51
Identities = 135/148 (91%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 148 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 89
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 88 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 29
Query 125 TAGCATGGAATAATAGAATAGGACGTGC 152
|||||||||||||| ||||||||||||
Sbjct 28 TAGCATGGAATAATGAAATAGGACGTGC 1
>seq24
Length=427720
Score = 259 bits (286), Expect = 9e-67
Identities = 247/315 (78%), Gaps = 1/315 (0%)
Strand=Plus/Plus
Query 4 TTGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGG 63
|| ||||||| ||||||||||||| || || || ||||| ||| ||| | |||||
Sbjct 357025 TTAGTCCGGCTAGGCCTTTCCTTCTATAGAACCCTATACCCTTTACTAGGTATAGCGGGG 357084
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123
| | |||||||||||| ||||||||||||| || | | |||| | | || |||| |
Sbjct 357085 AAATAAGACTTTTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCTTATACTTAAATATA 357144
Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183
|||| || |||||||| |||| || | |||||||||| || |||| |||||||||
Sbjct 357145 TTAGTATAGAATAATAAAATAAGATATATAGTTCTATTTTATTAGTTTTTAGGACCGCTA 357204
Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
|||| ||||||||||||| ||||||| | |||||| |||| | ||| || ||||||||
Sbjct 357205 TAATAATTAATAGGGATAATCGGGGGCATTAGTATTTAATTATTAGAAGTAAAATTCTTA 357264
Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303
|||||||| |||||||| |||||||||||| || | |||||| |||| |||||| || |
Sbjct 357265 GATTTATTAAAGACTAATTACTGCGAAAGCATTTGCTAAGGATATTTTTATTAATTAG-G 357323
Query 304 AACGAAAGTTAGGGG 318
|| |||||||||||
Sbjct 357324 AATAAAAGTTAGGGG 357338
Score = 100 bits (110), Expect = 5e-19
Identities = 65/70 (93%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308
||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||
Sbjct 352823 ATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATTAG-GAACGA 352881
Query 309 AAGTTAGGGG 318
||||||||||
Sbjct 352882 AAGTTAGGGG 352891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915198727872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |