Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq14 717 0.0 >seq14 Length=615434 Score = 717 bits (794), Expect = 0.0 Identities = 572/678 (84%), Gaps = 13/678 (2%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 6342 GCCGAGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 6283 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 6282 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 6223 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 6222 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAG 6163 Query 193 GGAAGCGCTTGCAACCAGAC-TTGCCCGCAGTTGCTCAACCGGC--CCCTCGGCCGGTGC 249 ||||||||| | ||||||| | | || | | | ||| || || | | || ||||| Sbjct 6162 GGAAGCGCTCGTGACCAGACGTGGGCCTCGGCGGATCATCCAGCGGTCTCCCGCTGGTGC 6103 Query 250 ACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTG 309 |||| | | | |||||||||||||| | | | | |||||||||| ||||||| ||| Sbjct 6102 ACTCCGCCGGGCCCAGGCCAGCATCAGTTTGCCCTGGGGGATAAAGGCTCCGGGAACGTG 6043 Query 310 GCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCG 369 || || || ||| ||||||||||||| | | ||| | | | |||||||||| || Sbjct 6042 GCTCC--TCCGGGAGTGTTATAGCCCGCCGCGCAATAC-CCTGGGGCGGACTGAGGTTCG 5986 Query 370 CG---CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGAC 426 || || ||||||||||||||||||||||| | |||||||||||||| ||||||||| Sbjct 5985 CGCATCTTTTGCTAGGATGCTGGCGTAATGGTTATCAGCGGCCCGTCTTGAAACACGGAC 5926 Query 427 CAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT 485 ||||||||| | || |||||||||||| ||||||||||||| | |||| ||||||||| Sbjct 5925 CAAGGAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGGAATGAAAGT 5867 Query 486 GAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA 545 ||||| ||||| || ||| | ||| ||| ||||||||||||||||||| ||||||||| Sbjct 5866 GAACGCAGGTGAGAGCCC-TCTGGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGA 5808 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||||||||||| | |||||||||||| ||||||||||||||| |||||||| Sbjct 5807 TTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTG 5748 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5747 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAA 5688 Query 666 ATTTGGGTATAGGGGCGA 683 || |||| || ||||||| Sbjct 5687 ATATGGGCATGGGGGCGA 5670 Score = 717 bits (794), Expect = 0.0 Identities = 572/678 (84%), Gaps = 13/678 (2%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 14932 GCCGAGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 14873 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 14872 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 14813 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 14812 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAG 14753 Query 193 GGAAGCGCTTGCAACCAGAC-TTGCCCGCAGTTGCTCAACCGGC--CCCTCGGCCGGTGC 249 ||||||||| | ||||||| | | || | | | ||| || || | | || ||||| Sbjct 14752 GGAAGCGCTCGTGACCAGACGTGGGCCTCGGCGGATCATCCAGCGGTCTCCCGCTGGTGC 14693 Query 250 ACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTG 309 |||| | | | |||||||||||||| | | | | |||||||||| ||||||| ||| Sbjct 14692 ACTCCGCCGGGCCCAGGCCAGCATCAGTTTGCCCTGGGGGATAAAGGCTCCGGGAACGTG 14633 Query 310 GCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCG 369 || || || ||| ||||||||||||| | | ||| | | | |||||||||| || Sbjct 14632 GCTCC--TCCGGGAGTGTTATAGCCCGCCGCGCAATAC-CCTGGGGCGGACTGAGGTTCG 14576 Query 370 CG---CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGAC 426 || || ||||||||||||||||||||||| | |||||||||||||| ||||||||| Sbjct 14575 CGCATCTTTTGCTAGGATGCTGGCGTAATGGTTATCAGCGGCCCGTCTTGAAACACGGAC 14516 Query 427 CAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT 485 ||||||||| | || |||||||||||| ||||||||||||| | |||| ||||||||| Sbjct 14515 CAAGGAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGGAATGAAAGT 14457 Query 486 GAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA 545 ||||| ||||| || ||| | ||| ||| ||||||||||||||||||| ||||||||| Sbjct 14456 GAACGCAGGTGAGAGCCC-TCTGGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGA 14398 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||||||||||| | |||||||||||| ||||||||||||||| |||||||| Sbjct 14397 TTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTG 14338 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 14337 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAA 14278 Query 666 ATTTGGGTATAGGGGCGA 683 || |||| || ||||||| Sbjct 14277 ATATGGGCATGGGGGCGA 14260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997018450