Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq14 361 9e-98 seq24 163 5e-38 seq60 114 2e-23 >seq14 Length=615434 Score = 361 bits (400), Expect = 9e-98 Identities = 238/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7440 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 7499 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 7500 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 7558 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 7559 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 7617 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 7618 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 7677 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 7678 AAAGAGCTCTCAATCTGTC 7696 Score = 361 bits (400), Expect = 9e-98 Identities = 238/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16030 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 16089 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 16090 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 16148 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 16149 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 16207 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 16208 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 16267 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 16268 AAAGAGCTCTCAATCTGTC 16286 >seq24 Length=427720 Score = 163 bits (180), Expect = 5e-38 Identities = 167/217 (77%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||| |||||| ||||| | |||||| ||||| ||| ||||||| ||| ||| ||||| Sbjct 372199 AGAATATCTAAAGGCATTATAGACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCCG 372141 Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 ||||||||||||| ||||| || | || | ||| |||||||||| || ||||| Sbjct 372140 ATAGTCCCTCTAAAAAGCCGGCATACTACTAAAGTAATATAGGCTATTTAGTAGATTAAG 372081 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| || ||||| | |||||| |||| |||| |||| || ||||||||||||| || Sbjct 372080 GTCTTATTTGTTATTGTAATTAAGCAGATAAATTACTCTACTAACTAAGAACGGCTATAT 372021 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || || | | ||| ||| || |||||||| | ||||| Sbjct 372020 ACTACTATCTATAAAATTAAAAAAGAGCTCTTAATCT 371984 Score = 147 bits (162), Expect = 3e-33 Identities = 166/218 (76%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 41 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAAT 100 || |||||| ||||| | |||||| ||||| | | ||||||| ||| ||| |||| ||| Sbjct 358283 AATATCTAAAGGCATTATAGACCTATTATTACTTTAAACTTCTATTAGCTT-AAGCTAAT 358225 Query 101 AGTCCCTCTAAGAAGCCAGCC-ACCA--ACCATAGTCGATGGGGCTATTTAGCAGGTTAA 157 |||||||||||||||| ||| || | | ||| | | ||||||||| ||||||| Sbjct 358224 AGTCCCTCTAAGAAGCTAGCGTACTATTAAAATAATATA---GGCTATTTAATAGGTTAA 358168 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||||||||||| |||||| ||| ||||||||| || ||||||||| || || Sbjct 358167 AGTCTCGTTCGTTATTATAATTAAGTAGATAAATCACTCTACTAACTAAGAATAGCTATA 358108 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || || || ||| ||| |||||| |||| | ||||| Sbjct 358107 TACTACTACTTATAAAATTAAGAAAAAGCTTTTAATCT 358070 >seq60 Length=154011 Score = 114 bits (126), Expect = 2e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| | |||| |||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 78898 TACTCGCTAGCTCTGTCAGTATAGCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACAG 78957 Query 61 ACCTGTTATTGCCTCAAACTT 81 |||||||||||| | |||||| Sbjct 78958 ACCTGTTATTGCTTTAAACTT 78978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798927059