Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq14 361 9e-98
seq24 163 5e-38
seq60 114 2e-23
>seq14
Length=615434
Score = 361 bits (400), Expect = 9e-98
Identities = 238/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7440 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 7499
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 7500 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 7558
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 7559 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 7617
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 7618 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 7677
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 7678 AAAGAGCTCTCAATCTGTC 7696
Score = 361 bits (400), Expect = 9e-98
Identities = 238/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16030 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 16089
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 16090 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 16148
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 16149 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 16207
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 16208 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 16267
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 16268 AAAGAGCTCTCAATCTGTC 16286
>seq24
Length=427720
Score = 163 bits (180), Expect = 5e-38
Identities = 167/217 (77%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98
|||| |||||| ||||| | |||||| ||||| ||| ||||||| ||| ||| |||||
Sbjct 372199 AGAATATCTAAAGGCATTATAGACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCCG 372141
Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158
||||||||||||| ||||| || | || | ||| |||||||||| || |||||
Sbjct 372140 ATAGTCCCTCTAAAAAGCCGGCATACTACTAAAGTAATATAGGCTATTTAGTAGATTAAG 372081
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||| || ||||| | |||||| |||| |||| |||| || ||||||||||||| ||
Sbjct 372080 GTCTTATTTGTTATTGTAATTAAGCAGATAAATTACTCTACTAACTAAGAACGGCTATAT 372021
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|| || | | ||| ||| || |||||||| | |||||
Sbjct 372020 ACTACTATCTATAAAATTAAAAAAGAGCTCTTAATCT 371984
Score = 147 bits (162), Expect = 3e-33
Identities = 166/218 (76%), Gaps = 7/218 (3%)
Strand=Plus/Minus
Query 41 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAAT 100
|| |||||| ||||| | |||||| ||||| | | ||||||| ||| ||| |||| |||
Sbjct 358283 AATATCTAAAGGCATTATAGACCTATTATTACTTTAAACTTCTATTAGCTT-AAGCTAAT 358225
Query 101 AGTCCCTCTAAGAAGCCAGCC-ACCA--ACCATAGTCGATGGGGCTATTTAGCAGGTTAA 157
|||||||||||||||| ||| || | | ||| | | ||||||||| |||||||
Sbjct 358224 AGTCCCTCTAAGAAGCTAGCGTACTATTAAAATAATATA---GGCTATTTAATAGGTTAA 358168
Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217
|||||||||||||| |||||| ||| ||||||||| || ||||||||| || ||
Sbjct 358167 AGTCTCGTTCGTTATTATAATTAAGTAGATAAATCACTCTACTAACTAAGAATAGCTATA 358108
Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|| || || ||| ||| |||||| |||| | |||||
Sbjct 358107 TACTACTACTTATAAAATTAAGAAAAAGCTTTTAATCT 358070
>seq60
Length=154011
Score = 114 bits (126), Expect = 2e-23
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| | |||| |||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 78898 TACTCGCTAGCTCTGTCAGTATAGCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACAG 78957
Query 61 ACCTGTTATTGCCTCAAACTT 81
|||||||||||| | ||||||
Sbjct 78958 ACCTGTTATTGCTTTAAACTT 78978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796798927059
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |