Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq50 87.8 3e-15 >seq50 Length=225513 Score = 87.8 bits (96), Expect = 3e-15 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 49 TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAG 108 ||||||||| |||| || |||| || ||||| ||||||||||| || || || | | Sbjct 140975 TCGTCCAGGTCCGGGGCGGGCGACTCCTCCAGCACCTTCTGGTGCCGCCGCTGGACGCTG 141034 Query 109 CAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCC 168 || ||||| ||||||||| || || || ||| |||| ||||| | || ||||| || Sbjct 141035 CAGTCGCGCTCGCCCAGGGCGACGGTGTTGCCGTGGCGGTCGGCAAAGACCTGCACCTCG 141094 Query 169 ACGTGACGTGG 179 ||||| || || Sbjct 141095 ACGTGCCGCGG 141105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735999008930