Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq14 154 2e-35 >seq14 Length=615434 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 8569 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 8628 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 8629 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 8688 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 8689 CACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 8748 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 8749 GTGAGGCGGACC 8760 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 17159 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 17218 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 17219 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 17278 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 17279 CACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 17338 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 17339 GTGAGGCGGACC 17350 Score = 127 bits (140), Expect = 2e-27 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 29 GCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACT 88 |||||||||||| ||||||||||||||||||||||| || || |||||| | || |||| Sbjct 1 GCACGTCCTATTTCATTATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACT 60 Query 89 CTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA-CCAATGAA-GGCATACGGGC 146 |||||||| |||| |||||||||||| |||| | |||| ||| |||| ||||| || Sbjct 61 CTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCACACCCAGTGAAGGGCATGGGGTT 120 Query 147 TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195 ||| || | ||| | || |||| | ||| |||||||||||| Sbjct 121 CCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCGGTGAGGCGGACC 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595199198526