Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq14 446 3e-123 seq60 280 3e-73 seq24 138 2e-30 >seq14 Length=615434 Score = 446 bits (494), Expect = 3e-123 Identities = 286/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 7605 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 7546 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7545 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 7486 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||||| Sbjct 7485 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 7428 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 7427 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGACAGAGCATTGCAATTATTG 7368 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 7367 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 7308 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 7307 CCCTTTGTA 7299 Score = 446 bits (494), Expect = 3e-123 Identities = 286/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 16195 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 16136 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16135 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 16076 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||||| Sbjct 16075 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 16018 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 16017 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGACAGAGCATTGCAATTATTG 15958 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 15957 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 15898 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 15897 CCCTTTGTA 15889 >seq60 Length=154011 Score = 280 bits (310), Expect = 3e-73 Identities = 198/224 (88%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 78978 AAGTTTAAAGCAATAACAGGTCTGTGATGCCCTTAGATATTCTGGGCCGCACGCGCGCTA 78919 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||||||| | ||||| | || | |||||| ||||| | |||||||||||||| || Sbjct 78918 TACTGACAGAGCTAGCGAGTAC-TCTC-TTGGCCAGAAGGCCCGGGTAATCTTGTTACAC 78861 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || |||||||| ||| |||||||||||||||||||||||| |||||||||| |||||||| Sbjct 78860 TCCGTCGTGCTAGGGGTAGAGCATTGCAATTATTGCTCTTTAACGAGGAATCCCTAGTAA 78801 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || |||||| |||||||| | |||||||||||||||| Sbjct 78800 GCGCAAGTTATCAGCTTGCGTTGATCATGTCCCTGCCCTTTGTA 78757 >seq24 Length=427720 Score = 138 bits (152), Expect = 2e-30 Identities = 187/260 (72%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 ||||||||| || |||||||||| |||| | | |||||||| ||||||||| Sbjct 372077 AGACCTTAATCTACTAAATAGCCTATATTACTTTAGTAGTATGCCGGCTTTTTAGAGGGA 372136 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 ||||||||| |||| || ||||||| ||| ||||| |||||| | ||||| |||||| | Sbjct 372137 CTATCGGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATGCCTTTAGATAT 372196 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| || | ||| ||| | ||||| || ||| || || || |||| Sbjct 372197 TCTAAGCTATATATATACTATACTAATAGAGCTAATAAGT--ATTCTTTTAGCTAAAAGG 372254 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||| ||||||||| |||| | |||||||| ||| ||||||| ||||| Sbjct 372255 CCTAAATAATCTTATTAAACTCTATCGTATTAAGGATAGAGTATTATAATTATTACTCTT 372314 Query 265 CAACGAGGAATGCCTAGTAA 284 || ||||| |||||||| Sbjct 372315 TAATATGGAATCCCTAGTAA 372334 Score = 109 bits (120), Expect = 1e-21 Identities = 211/309 (68%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||| ||||||| ||||||||| ||| | ||| ||||||||| Sbjct 358158 GAACGAGACTTTAACCTATTAAATAGCCTATATTATTTTAATAGTACGCTAGCTTCTTAG 358217 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||||| ||| |||| || ||||||| | | ||||| |||||| | ||||| ||| Sbjct 358218 AGGGACTATTAGCTTAAGCTAATAGAAGTTTAAAGTAATAATAGGTCTATAATGCCTTTA 358277 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||| || | || | ||| ||| | | ||| | | | | || |||| || Sbjct 358278 GATATTTTAAGCTATATATATACTATACTAATAAAGCTAGTAAATAC-TC-CCTTAGCTA 358335 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||| || ||||||| ||||||||| | | || |||| |||||| ||||||| Sbjct 358336 AAAGGCCTAAATAATCTTATTAAACTCTATTATACTAAAGATAAAGCATTATAATTATTA 358395 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||| || |||||| ||||||||||| |||| ||| || |||| ||||| Sbjct 358396 CTCTTTAATAAGGAATCCCTAGTAAGCGTAAATCATTAGCTTATATTAATTATATCCCTA 358455 Query 320 CCCTTTGTA 328 || ||| || Sbjct 358456 CCTTTTATA 358464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198683392