Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq14 724 0.0 seq24 342 2e-91 >seq14 Length=615434 Score = 724 bits (802), Expect = 0.0 Identities = 466/505 (92%), Gaps = 3/505 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 364 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 365 CCCCGGATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 424 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 425 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 484 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 485 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 544 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGG 299 ||||||| ||||||||| ||||||| |||| |||||||| |||||| | ||||| |||| Sbjct 545 CAAGGCCCTGCGATTCGAGAAGTTATCATGATTCACCAAGAGAGCCCAG-AGGGCATTGG 603 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 604 TTTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTA 663 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||| |||| ||| |||||||||||||||||||||| || ||||| Sbjct 664 GAATTACCACGGTTATCCAAGTAGCAAGATACTATCAAATAAACGATAACTTATATAATG 723 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 724 AGCCATTCGCAGTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 782 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 783 GAGACAAGCATATGACTACTGGCAG 807 Score = 724 bits (802), Expect = 0.0 Identities = 466/505 (92%), Gaps = 3/505 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8896 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 8955 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8956 CCCCGGATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 9015 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 9016 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 9075 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 9076 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 9135 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGG 299 ||||||| ||||||||| ||||||| |||| |||||||| |||||| | ||||| |||| Sbjct 9136 CAAGGCCCTGCGATTCGAGAAGTTATCATGATTCACCAAGAGAGCCCAG-AGGGCATTGG 9194 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 9195 TTTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTA 9254 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||| |||| ||| |||||||||||||||||||||| || ||||| Sbjct 9255 GAATTACCACGGTTATCCAAGTAGCAAGATACTATCAAATAAACGATAACTTATATAATG 9314 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 9315 AGCCATTCGCAGTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 9373 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 9374 GAGACAAGCATATGACTACTGGCAG 9398 Score = 724 bits (802), Expect = 0.0 Identities = 466/505 (92%), Gaps = 3/505 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17486 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 17545 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 17546 CCCCGGATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 17605 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 17606 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 17665 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 17666 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 17725 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGG 299 ||||||| ||||||||| ||||||| |||| |||||||| |||||| | ||||| |||| Sbjct 17726 CAAGGCCCTGCGATTCGAGAAGTTATCATGATTCACCAAGAGAGCCCAG-AGGGCATTGG 17784 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 17785 TTTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTA 17844 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||| |||| ||| |||||||||||||||||||||| || ||||| Sbjct 17845 GAATTACCACGGTTATCCAAGTAGCAAGATACTATCAAATAAACGATAACTTATATAATG 17904 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 17905 AGCCATTCGCAGTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 17963 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 17964 GAGACAAGCATATGACTACTGGCAG 17988 >seq24 Length=427720 Score = 342 bits (378), Expect = 2e-91 Identities = 376/498 (76%), Gaps = 2/498 (0%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| ||||||||| | ||| |||||||||| | |||||||| Sbjct 356868 TACTTATTCTAATTATAAGACCTAAAAGAGCCTTATATTAGTATTTATTATTACTACCTC 356809 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | ||||| |||||||| ||||| |||||||||| ||| | ||||||||| Sbjct 356808 TTTAGATTAGGATTAGGTAATTTATACGCCTATTGCCTTCCTTAGATATAATAGCCGTTT 356749 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||||| ||| | || | || ||| | ||||| || | || | Sbjct 356748 CTTAGGCTCCTTCTTTAGGGTCAAGCCTTAACCCTTTATTACCTATTATAATTATATTTA 356689 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||| | || |||||| |||||| |||||||| ||| ||| || ||||| Sbjct 356688 GCTACTATCTAAATATTAAAAGTTAATAGGGAAGAAATTTAAATAAACTATTGCCGGTAT 356629 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 |||||| | ||| |||||||||| | | || | ||||| |||| || ||| Sbjct 356628 AAGGCCTTATAATTTAAAAAGTTATTATAATTTACTAGAGAGCCTAAAAGGTA-TTAGTT 356570 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | |||||| |||||||| ||||||| || |||||||| |||| Sbjct 356569 TTTAATCTAATAAATATATCCCTTCTAAAGTCGGGATTTTTAGTATATATTAGCTTTAGA 356510 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | ||||||| | ||||||| |||||| ||||||||||||||| || |||| || Sbjct 356509 ATTACTATGGTTATCTAAGTAGTAAAATACTATTAAATAAACGATAACTTATATAATAAG 356450 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| |||||||| || |||| |||||||||||||||| || || ||||||||||| | Sbjct 356449 CTATTTGCAGTTTCGCTATATA-ATTGCTTATACTTAGATATATATAGCTTAATCTTTAA 356391 Query 482 GACAAGCATATGACTACT 499 || |||||||| |||||| Sbjct 356390 GATAAGCATATAACTACT 356373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397900544