Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 365 4e-96 seq32 149 5e-31 >seq1 Length=1559860 Score = 365 bits (404), Expect = 4e-96 Identities = 1205/1845 (65%), Gaps = 74/1845 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCC-AGCA--CGCCAAGCATAGAAATGCATCGATGATAAT 65179 ||||||||||| |||||||| || ||| | || ||| || |||||||| | | || Sbjct 377608 TAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACG-TGAT 377663 Query 65180 TTTGC--ATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAAC 65237 |||| || || || || || || || || | ||||| ||| ||||| | Sbjct 377664 CTTGCCCATGGTTGGG-TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGG 377722 Query 65238 GACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGT 65297 ||| || || || ||||| | | | | |||| ||| || |||||||| ||||||| Sbjct 377723 CACCGCGGTCGGCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGT 377782 Query 65298 ACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA 65357 |||| |||||| ||||| | |||| ||||| || || |||| Sbjct 377783 ACAGAGCCTTTACCTCGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAA 377842 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAG 65416 | |||||||| ||| | |||||||||| ||||| |||| |||| |||| ||| Sbjct 377843 TGATGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAG--AAG 377900 Query 65417 TGACGA-TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 | | |||| ||| ||||||||||| | ||| || || || || ||||||||||| Sbjct 377901 CCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGT 377960 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | ||| || ||| | || ||||||| ||||| || | || || || || |||||||| Sbjct 377961 GTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGG 378020 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGT--TCATTTCAATGTTG--TGACGCAATTCGT 65591 |||| || || ||||| || | |||| || || || | ||| | ||| Sbjct 378021 CGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAAT---- 378076 Query 65592 CCCAGTTCCACA--TCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||| | ||||| |||| || | || ||| |||||| || |||||| | Sbjct 378077 CCCACTCCCACAAGTCGGA-------CGGCGTC-ACGTTCCACATGTCAAACTGCAGGAT 378128 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || | |||||| || || ||| | ||| |||||||||||||| || | Sbjct 378129 GCCTTCAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC 378188 Query 65710 -ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | | || || ||||| || |||||||| ||||| | || || || | Sbjct 378189 CACCGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGC 378247 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAA 65828 | ||||| ||| | ||||| | | | | || | |||||||| ||||||| Sbjct 378248 GAGCCTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAA 378307 Query 65829 CTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGT 65888 | || | ||| ||||||||||| |||| ||| | || || | || ||||||| Sbjct 378308 CACCGACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGT 378367 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAA 65946 |||| ||||| || || | ||| || ||||| || | |||||| || Sbjct 378368 GGTTGACGTCGATGATCTTGTTGAGATTTCGGACAACCAC--GCGGGTGACGTCGTGCAG 378425 Query 65947 TTGTTCGAAATCAAAAT-GTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAA 66005 | || ||| || | | | | || || ||| ||||||| ||| | Sbjct 378426 CTTTTGGAAGTCGTACTTGCCTTGGTCGT-----AGT--------CCACAAAGGCGGGCA 378472 Query 66006 GGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTT 66065 ||||||| || || ||||||||||| || | |||||| || || | ||||||| ||| | Sbjct 378473 GGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCT 378532 Query 66066 CGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGC 66125 ||||||| || || || ||| ||||| ||||| |||| || || ||||| | |||| Sbjct 378533 CGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGC 378592 Query 66126 ATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGT 66185 | ||||||||||| ||| | || |||| ||||| || | ||| | ||| | || Sbjct 378593 AATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGT 378652 Query 66186 GCCAAAGA----GCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATG 66240 ||| || | ||| | || || | | | ||| | |||| ||| ||||| | Sbjct 378653 ACCACAGCTTCTGGGCGCGGATT----GT-CTTGCGGCCACGGCCTTCGCGCTCGTACTT 378707 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||| || | || || || || | |||| || | || || | || || Sbjct 378708 TTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGG 378767 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| || | ||| || |||| || || ||||| ||| || || || || ||||| Sbjct 378768 GCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 378827 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 || || |||||| ||||| || || ||||| ||||||| || || | | || Sbjct 378828 CAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATC 378887 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||||| ||||| ||||| || ||||||||||||||||| | |||| || Sbjct 378888 AAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCG 378947 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| ||| |||||||||||||| | || ||||||||||| |||| ||| || || Sbjct 378948 CTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAAC 379007 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 || ||||| || |||| ||||||||| | ||| |||||| || || || ||| Sbjct 379008 GACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTG 379067 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTC 66658 || ||||| || ||||| |||||| | || || || || ||| || | | |||| Sbjct 379068 GACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTC 379127 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| || ||| ||| |||| ||| | |||| |||| || ||| || Sbjct 379128 --GTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGA 379185 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 | || ||| | || ||||||||| |||| ||||| || ||| | | | ||| Sbjct 379186 CACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGAC 379245 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838 ||| ||||| || || | ||| |||||||| || || || |||| ||| Sbjct 379246 ATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACA 379305 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTA 66894 ||||| | | || ||||| |||||||| | |||| ||| | | || | || Sbjct 379306 CGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCG-TCC---AGCTTCAGGAGATA 379361 Query 66895 GGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || || ||||| ||||||| |||||||||| || ||||| || Sbjct 379362 CGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTC 379406 >seq32 Length=314566 Score = 149 bits (164), Expect = 5e-31 Identities = 236/334 (71%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | || ||| | || || Sbjct 225873 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 225814 Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || || | |||||| | | | | ||| || |||| | |||||||| Sbjct 225813 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGA-CGATGAAAAGTATTTCATTTC 225755 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | ||||| |||||||| || ||||| || |||||||| || || | | || || Sbjct 225754 TCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCG 225695 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | |||||||| || | || || |||||||||||||| |||||||| | Sbjct 225694 GTTCA-GCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGA 225636 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||||||| |||| || |||| ||| | | | ||||| ||||| |||| ||||| | Sbjct 225635 TGGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGAGCACG 225576 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415 || | || | | ||||||||||| || || Sbjct 225575 CGCAGCGAAATTACCTCTTCAATGCCATTGAAAC 225542 Score = 120 bits (132), Expect = 2e-22 Identities = 297/446 (67%), Gaps = 5/446 (1%) Strand=Plus/Minus Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 |||||||| | || || || | |||||||| | || |||||||| | || || | | Sbjct 225404 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCA 225345 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||||||| | ||||| || || || |||||||| || |||||| || || | |||| Sbjct 225344 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATAT 225285 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA 61666 | || |||||||| |||| || ||||| |||| || | | |||| | Sbjct 225284 CCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTG--CACTCTC-ATCTCAAGC 225228 Query 61667 ATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGG 61726 | | | || | | || || | || || || || || || || | Sbjct 225227 AAAGAGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAG 225168 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 | || ||||| || ||| |||| | | || |||||||||| | ||| ||| || Sbjct 225167 ATTTCCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTGATGAAGC 225108 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTAT 61845 | || || ||||| ||||||||||| |||||||| | | | ||| ||||| || | || Sbjct 225107 AATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGG-TGTAC 225049 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 || || || || |||||||| ||||| | || || |||| ||||||||| || ||| Sbjct 225048 AAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTT 224989 Query 61906 TTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||| || || || || || || Sbjct 224988 TTTGAGAAGCGAGTTGGTGAATACCA 224963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567326494960