Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 313 2e-80 seq1 129 5e-25 >seq3 Length=3828249 Score = 313 bits (346), Expect = 2e-80 Identities = 555/803 (69%), Gaps = 6/803 (1%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || || |||| || || |||||||||||||| | ||| |||||||| ||||||| Sbjct 3341798 GGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATG 3341857 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || ||||||||||| || || ||| ||||| |||| |||| || || |||||||| Sbjct 3341858 ATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGG 3341917 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||| | |||| | || |||||||||| |||| ||| | |||| Sbjct 3341918 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATG 3341977 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATG 66240 |||| ||| || | ||||||| || | | | ||| | |||| | ||||| | Sbjct 3341978 GCGTACCACAGCTTCTGAGCCTTCATGGT-CTTGCGGCCGCGGCCTTCTCTCTCGTACTT 3342036 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||||| || ||||| ||||| | ||| | || | || |||| || || Sbjct 3342037 CTCGTACAGAGCCTCGAACTCGTCACCGTAGCATTCAGCAAGGCCGGGGCACTCGTTGGG 3342096 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| || | ||| || || | || || || || ||| || || ||||| ||||| Sbjct 3342097 GCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCA 3342156 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 |||||| |||||| ||||| || || |||||| | ||||| || || ||||| || Sbjct 3342157 GAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATC 3342216 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 |||||||||||||| || || |||||||| ||||||||||| ||||| | || ||| Sbjct 3342217 GAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACG 3342276 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| ||||| ||||| ||||| || || |||||||||||||| | ||| || | Sbjct 3342277 CTTGTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAAT 3342336 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 || || || || |||| ||||| ||| | || || || || || ||| || Sbjct 3342337 GATACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGGATACGATG 3342396 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTC 66658 || |||||||||||||| |||||| |||| ||||| || || || | | | || Sbjct 3342397 GACGTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATC 3342456 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | || || |||||| |||| |||| ||| | |||| ||||||| || || Sbjct 3342457 --GTAGATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGA 3342514 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 || | |||||| | || ||| || || || | ||||| || || | | | | ||| Sbjct 3342515 GGCTGGGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGAC 3342574 Query 66779 ATGTAATTGTACGTCTCGATGAC 66801 || ||||| ||||| || || Sbjct 3342575 ATCAGGTTGTAAGTCTCAATCAC 3342597 >seq1 Length=5395810 Score = 129 bits (142), Expect = 5e-25 Identities = 282/422 (67%), Gaps = 3/422 (1%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || ||||| || | || ||| | ||||| ||| ||||||| || || Sbjct 863684 GTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGT 863625 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| || ||||||||| ||| ||| |||| || || |||||||| |||| Sbjct 863624 CTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAGGGTCTGCACACC 863565 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 || || || |||| ||| | | ||| ||| || || ||| ||| || Sbjct 863564 GACTTCGCCTGCCTGCTGTTCTCTCAC---CTGAGGAACCGCCCCAGCAAGGCGCGCGTC 863508 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | |||| | ||| || || | || || |||| || |||||||| ||| | ||| Sbjct 863507 GAGAAGATCATCACTGATGCCGTCGCCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCC 863448 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | || |||||||||| || ||| |||||| || || || || |||||| Sbjct 863447 TGCAGTCTGCTCGGCATGAACGCCAACCTGATGAAGCAGTACATCGAGTTCGTGGCCGAC 863388 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 ||||| | |||| | || | || | |||| || | | ||||| || || ||| Sbjct 863387 CGTCTCCTCGTCGCCCTTGGCAACGAGAAGGTCTACAAGTCCACCAACCCCTTCGACTTC 863328 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | || || || | |||||||| || || |||||||| ||||| || ||||| Sbjct 863327 ATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAC 863268 Query 61930 CA 61931 || Sbjct 863267 CA 863266 Score = 118 bits (130), Expect = 8e-22 Identities = 210/298 (70%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||| || |||||||||||||| | |||||| | ||| | Sbjct 864171 ATATGGCAAATGTACAAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 864112 Query 61147 TCCAAAGACATGAATGACTGGG---AGCGTTT-ATCGAGCGGTGAACAACATTTCAT-TA 61201 ||||| || || | |||||| | || | | || | ||| | | ||||| | Sbjct 864111 TCCAAGGATCTGCACGACTGGAGCAACCGCCTGAATGAT-GACGAAAAGTACTTCATCTC 864053 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || ||| | ||||| || ||||| || ||||| ||||| ||||| | | || | Sbjct 864052 TACCATCCTTGCC-TTCTTCGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAGC 863994 Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||||| |||| | |||| ||| | | ||||| ||||| ||||||||||||||||| Sbjct 863993 GTTTCAGCGCCG-AGGTTCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATG 863935 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||||| | ||||| |||| ||| | |||||||| || ||||||| ||||| Sbjct 863934 ATGGAGAACATTCACTCCGAGACATACTCCCTGCTCATCGACACATACATCAAGGAGC 863877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566289587920