Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq420 235 9e-60
seq449 104 4e-20
seq90 77.0 5e-12
seq190 75.2 2e-11
>seq420
Length=377
Score = 235 bits (260), Expect = 9e-60
Identities = 227/283 (80%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || || |||||| |||||||||||||||| |||| |||| ||||||
Sbjct 101 GTACGAGAGGAACTGCTGA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACCGGGCAGT 158
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 159 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 218
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| | |||| | |||| |||| | |||| |||||| ||||||||| ||||| || |
Sbjct 219 GAACGCGATGATAC-CTCCCGCACGTTGTAGACGGATAAGAATAGGCTCCGGCCTCGCAT 277
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
| |||||||| | | || || || |||| | || | | | | ||| ||
Sbjct 278 CCTAGCAGGCGATTCCTCCACCGGACTC-----GAAGTGGACGGTGGT-AATTCGCGTAT 331
Query 237 TGCAATTTCACCATGCGCAGGGAT-AAATCCTTTGCAGACGAC 278
|| ||||| | || | || ||||| ||||||||||||||||||
Sbjct 332 TGTAATTTTAACACGAGC-GGGATCAAATCCTTTGCAGACGAC 373
>seq449
Length=251
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 149 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 92
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 91 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 38
>seq90
Length=136398
Score = 77.0 bits (84), Expect = 5e-12
Identities = 64/77 (83%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 56 GCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115
|||| ||||||| |||| ||||||||| | || ||||||||||| || | ||||||||
Sbjct 43033 GCAGCGCCGCGACGCTATCATCTGCTGAACGATAGCTGAACGCCTTGAAAT-AGAATCCA 43091
Query 116 TGCCAGAACGGGGTGAT 132
|||||||||| | ||||
Sbjct 43092 TGCCAGAACGTGATGAT 43108
>seq190
Length=36839
Score = 75.2 bits (82), Expect = 2e-11
Identities = 50/56 (89%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 33 GGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88
|||||||||| |||| |||||||||||||||||| |||||||| |||||||| ||
Sbjct 31180 GGTTTTTGCGATTGTCCGACCAGGCAGTGCCGCGATGCTACCATGTGCTGGATAAT 31125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819196230400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |