Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10 311 7e-80 seq15 163 2e-35 seq8 82.4 6e-11 >seq10 Length=848763 Score = 311 bits (344), Expect = 7e-80 Identities = 1225/1895 (65%), Gaps = 84/1895 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | | || || |||| || | |||||||||||||| ||| Sbjct 459616 TCGACGGTGAACTGGATGGGAGCAGAGGCAGCCTGTGTACGCAGATAGTACATGCCAGTC 459675 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC--ATAATTCGGC 65194 ||||| || ||| ||| || ||||||||| || | | || |||| || || || Sbjct 459676 TTGAGACCGAGCTT-CCAGCCAGCGAAATGCATGGAGG-TGATCTTGCCCATCGTT-GGT 459732 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA-CCACGATCTGCAGC 65253 || || || || || | ||||| || || ||| |||| |||||||| || || Sbjct 459733 TCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATG-AACGCGCCACGATCGGCGGC 459791 Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 ||| | |||| | | ||| ||| |||||||| |||||||||| | || Sbjct 459792 CATCTGGATGACATGGCGTTGGCTTATTTCCCAGACCGTCTTGTACAATGCTTTAATATC 459851 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | |||||| | |||| ||| | ||||||| ||||| ||||| || ||| Sbjct 459852 ATCTGGAATGTTTGGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCGGTTCTTCAT 459911 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 || ||||||||||||| || | |||| || | ||| | |||||| ||| || Sbjct 459912 ATTGTCAGACCACAAACCCATGTCAACGAGATCTTTGAGCAACCAAGGATTGACGACCTG 459971 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||| || || ||||| |||||||| || || || || ||| | || Sbjct 459972 GAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTC 460031 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 |||| || || || || | ||| || || ||||||||||| || || | || ||||| Sbjct 460032 GTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTT 460091 Query 65554 TCGCAATCCGTTCATTTCAATGT----TGTGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 || | || | | ||| || | | ||| || |||||||| ||| | | | Sbjct 460092 GCGGACACCATGCTTTTTGATCTCAGCTTTGAGGCT----GTCCCAGTCCCAGA---GAT 460144 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CCGGT 65665 | || | || ||| |||||| || | |||| | || |||| | || Sbjct 460145 CA--GTTGGAGTC-ACGTTCCACATGTCATACTGCAAAATCCC----CTGGGACACGGGC 460197 Query 65666 GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAG 65724 || || |||| || || | ||| |||||||| | ||| | | | || || Sbjct 460198 GAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCACACGAAGCTGTC-AG 460256 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784 ||||| || ||||| || || || | || || ||| ||||| || Sbjct 460257 AGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCCTCTGGAGAGTC 460316 Query 65785 GTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGG 65844 | | |||| | || || |||| ||||| ||||| || || || | |||||| || Sbjct 460317 GAATGGCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGCACACCGACACCGATAGG 460376 Query 65845 ACGATGACGCAAATT---GGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 ||| || | || || | |||| ||||| ||||||||||||| || || ||||| Sbjct 460377 ACGGTGTCTCATGTTACTGTTACGT---GCCTCTGGTACAGGGTAGTGGTTAATGTCGAT 460433 Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTC--GCAATTGTTCGAAATC 65958 || ||||| ||||| || ||||| | | || || ||| | | ||| || Sbjct 460434 GATCTTGTTCAAGTTGCGA---ACGACATGGCGGGTGACCTCATGCAGCTTCTTGAAGTC 460490 Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACC-ACAAACTTGGGAAGGGCAAGAGATG 66017 || | ||| | || |||| | ||||| | || || || ||||| | Sbjct 460491 -----GTAT-------TCGCCAC-GCATGACATCGACAAAGGTTGGCAGAGCCAGAGAGG 460537 Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077 | | ||| || || || | |||||| || || || ||||| | || |||||||| || | Sbjct 460538 CCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAAAGGT 460597 Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137 | || ||| ||||| |||| || | || || |||||||| ||||| || ||||||| Sbjct 460598 TGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGT 460657 Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG----- 66192 | | |||| | ||| |||| ||||| || | || || ||||| | ||| || Sbjct 460658 AGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGCTTCT 460717 Query 66193 -AGCGCG--TGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAG 66249 ||| || || |||| || || ||||| |||| ||||| | ||||| || Sbjct 460718 GAGCACGGATGGTCTCACG--ACC-ACGGCCCT-CCTTC----TCGTATTTCTCGTATAG 460769 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 | || || ||| || | || |||| || | || | | ||||| | || Sbjct 460770 GGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAG 460829 Query 66310 CGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 | ||| ||||| |||||| || || ||| || |||||||| |||| | || || Sbjct 460830 TGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATA 460889 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTC 66429 ||||||||| || || || | ||| || | ||||| || ||||||||||| || | | Sbjct 460890 GAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCC 460949 Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489 ||| ||||| ||||||||||| || ||||| |||||||| | || || ||| ||| Sbjct 460950 AAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC 461009 Query 66490 ACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||| || || || || ||||| | ||| || ||||||||||||| || | || || Sbjct 461010 ACCCTGATCAACATATCGAGCGGTGGCATCGT---AGACACGCAACATAGGAATTAGACC 461066 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATT 66606 ||| ||| |||| ||||| || | ||| || || || || || ||| || || Sbjct 461067 GTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTT 461126 Query 66607 CAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAAT 66664 |||||| || |||||||| ||||| || || |||||| || | |||| | | Sbjct 461127 CAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTC--GTAG 461184 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 ||||| || ||| ||| |||| || | |||| |||| || || || || Sbjct 461185 ATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGAC 461244 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 || ||| | || || || ||||| | ||||| || ||||| | |||||||| Sbjct 461245 GGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG 461304 Query 66785 TTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATC 66844 | ||| ||||| ||| || ||||||| ||| || || || || | ||| ||||| Sbjct 461305 TCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGCATA 461364 Query 66845 AGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904 | | || || || | || ||| | | ||||| | | | |||||| | ||| Sbjct 461365 ATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCC 461424 Query 66905 AGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | || |||| ||||| ||| ||| ||||| || Sbjct 461425 AATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTC 461459 >seq15 Length=603150 Score = 163 bits (180), Expect = 2e-35 Identities = 216/294 (73%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||||||||||||| ||||| || ||||||||||| | |||||| ||||| ||||| Sbjct 375449 TGGCGCATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGTCC 375508 Query 61150 AAAGACATGAATGACTGGGAG---CGT-TTATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||||| ||||||| | ||| ||| ||| | || | ||||| || Sbjct 375509 AAGGACATTCCTGACTGGAACAACCGTCTTAACGAT-GACGAGCGCTTCTTCATCTCGCA 375567 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 | | || ||||| ||||| ||||| || ||||| || ||||| || | ||||| || Sbjct 375568 CATCCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGAACGCTT 375627 Query 61266 C-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 | |||||| || | || | | ||||| || || ||||||||||||||||||||||||| Sbjct 375628 CAGCGCAGAAG-TACAGATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATGG 375686 Query 61325 AGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||| | ||||| |||| |||| | || ||||| ||||||||||| |||| Sbjct 375687 AGAACATTCACTCCGAGACGTACTCGCTGCTTATCGACACGTACATCAGCGAGC 375740 >seq8 Length=997024 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 9150 GGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACG 9209 || ||| | || |||||||||||||| || ||||| || |||| |||| |||||| Sbjct 376632 GGTCCCGTATATGGTTTCCAGTGGCGTCACTTCGGAGCGGAGTACGTCGACGCGCATACG 376691 Query 9210 GACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAG 9269 || |||||||| || |||||||| ||| | ||| | || || || || | | || Sbjct 376692 GATTATACGGGGCAGGGTGTGGACCAGCTCGCGGACGTGATCGATAAGCTCAAGAACAAG 376751 Query 9270 CCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATGGTA 9329 ||| ||| ||||| || ||| || ||||| || ||| || | || |||| Sbjct 376752 CCGTACGATCGGCGCATCATCCTGAGCGCGTGGAACCCCGCCGACCTGAAGAAAATGGCC 376811 Query 9330 TTGCCGCCATGCCATATG 9347 ||||| || ||||| ||| Sbjct 376812 TTGCCACCTTGCCACATG 376829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566221752880