Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq16224 253 3e-65 seq5557 149 9e-34 >seq16224 Length=81348 Score = 253 bits (280), Expect = 3e-65 Identities = 201/240 (84%), Gaps = 16/240 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 75768 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 75825 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 75826 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGTTTCACAAGATT 75885 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTG-----------AATACATCAGTGTA 168 |||||||||| |||||||||| | ||||| || | |||||||| Sbjct 75886 ACCCGGACCTTTCGGCCAAGGCAGT--ACTCGCTGNNNNNNNNNNNNNNNCGTCAGTGTA 75943 Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75944 ACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 76003 >seq5557 Length=585122 Score = 149 bits (164), Expect = 9e-34 Identities = 172/227 (76%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || |||||| ||||||||| | |||| |||| || ||| || |||||||| ||| || Sbjct 383382 TATAAAGGGTAGGGACGTAATTAACGTAAGCTA-ATAACTTACGTTTACTAGGGATT-CC 383439 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 ||||| |||| || |||| |||| ||||||| | | | | ||| | ||||||| Sbjct 383440 TCGTTAAAGAGTAATAATTATAATGCTCTATCCTTAATATAACGGGGTTTTATAAGATTA 383499 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| ||||| ||||| || |||| | | | |||||| |||||||||| Sbjct 383500 CCCGGACCTTTCGGCTAAGGTAGTA--CTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGG 383557 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 || |||| |||||||||||| | |||||| ||||||||| ||||||| Sbjct 383558 CCTAGAATATCTAAGGGCATTATAGACCTATTATTGCCTTAAACTTC 383604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751795429915