Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq16224 253 3e-65
seq5557 149 9e-34
>seq16224
Length=81348
Score = 253 bits (280), Expect = 3e-65
Identities = 201/240 (84%), Gaps = 16/240 (7%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 75768 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 75825
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 75826 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGTTTCACAAGATT 75885
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTG-----------AATACATCAGTGTA 168
|||||||||| |||||||||| | ||||| || | ||||||||
Sbjct 75886 ACCCGGACCTTTCGGCCAAGGCAGT--ACTCGCTGNNNNNNNNNNNNNNNCGTCAGTGTA 75943
Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75944 ACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 76003
>seq5557
Length=585122
Score = 149 bits (164), Expect = 9e-34
Identities = 172/227 (76%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|| |||||| ||||||||| | |||| |||| || ||| || |||||||| ||| ||
Sbjct 383382 TATAAAGGGTAGGGACGTAATTAACGTAAGCTA-ATAACTTACGTTTACTAGGGATT-CC 383439
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
||||| |||| || |||| |||| ||||||| | | | | ||| | |||||||
Sbjct 383440 TCGTTAAAGAGTAATAATTATAATGCTCTATCCTTAATATAACGGGGTTTTATAAGATTA 383499
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||||||| ||||| ||||| || |||| | | | |||||| ||||||||||
Sbjct 383500 CCCGGACCTTTCGGCTAAGGTAGTA--CTCGCTAGCCCCGTTAGTGTAATGCGCGTGCGG 383557
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
|| |||| |||||||||||| | |||||| ||||||||| |||||||
Sbjct 383558 CCTAGAATATCTAAGGGCATTATAGACCTATTATTGCCTTAAACTTC 383604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751795429915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |