Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq16224 158 7e-37 seq5557 86.0 3e-15 >seq16224 Length=81348 Score = 158 bits (174), Expect = 7e-37 Identities = 106/117 (91%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| || ||||| | |||||| || || Sbjct 65657 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGGGTCAAGAA-ATAACACCGTCC 65715 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 65716 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 65772 >seq5557 Length=585122 Score = 86.0 bits (94), Expect = 3e-15 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||| |||| | |||||| | | || || || | |||| | || |||||||||| | Sbjct 383865 ACTTTAATTTTTTATAAGGTACTAAACGGGTTAAGAA-ATAATACCGTCCGATCCCTAAT 383923 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||||||| ||||||| ||||||||||||| ||||||||||| Sbjct 383924 CGATATAGTTTATAGTTAAGATTACGACGGTATCTAATCGTCTTCGA 383970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278326708590