Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq16224 264 2e-68 seq5557 219 8e-55 >seq16224 Length=81348 Score = 264 bits (292), Expect = 2e-68 Identities = 172/188 (91%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||||| Sbjct 65960 GGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCCGTAATGAT 65901 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| || Sbjct 65900 TAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGGATCGAT 65841 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct 65840 TGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAA 65782 Query 311 GTTAGGGG 318 |||||||| Sbjct 65781 GTTAGGGG 65774 >seq5557 Length=585122 Score = 219 bits (242), Expect = 8e-55 Identities = 229/300 (76%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74 |||| || |||||| ||| ||| || |||| ||| || || |||| ||||| | Sbjct 384269 GGGCTTTACCTTCTACGGAACCGTATCTCCTTTACTAGGGGTATTAGGGAAATAGGACGT 384210 Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134 ||||||| ||||||||||||| || | | |||| | | |||||||| ||||| || ||| Sbjct 384209 TTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCTTATACTCGAATATATTAGTATAGAA 384150 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||||||||||||||| || ||||| ||| ||||||||||||||||||| |||||| Sbjct 384149 TAATAGAATAGGACGTATAGTCTTATTTCGTTAATTTCTAGGACCGCCGTAATAATTAAT 384090 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 ||||||| ||||||| | | |||| |||| | | | ||||||||||| ||| ||| || Sbjct 384089 AGGGATAATCGGGGGCATTAATATTTAATTATTAAAAGTGAAATTCTTAGATCGATTAAA 384030 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 || ||| || | ||||||| || || || ||| || | |||| |||||||||||| Sbjct 384029 GATTAATTATTACGAAAGCATTTACTAAAGATATTNT-ATTA-----GGAACGAAAGTTA 383976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914943002688