Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq16224 264 2e-68
seq5557 219 8e-55
>seq16224
Length=81348
Score = 264 bits (292), Expect = 2e-68
Identities = 172/188 (91%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 65960 GGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCCGTAATGAT 65901
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 65900 TAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGGATCGAT 65841
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 65840 TGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAA 65782
Query 311 GTTAGGGG 318
||||||||
Sbjct 65781 GTTAGGGG 65774
>seq5557
Length=585122
Score = 219 bits (242), Expect = 8e-55
Identities = 229/300 (76%), Gaps = 6/300 (2%)
Strand=Plus/Minus
Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74
|||| || |||||| ||| ||| || |||| ||| || || |||| ||||| |
Sbjct 384269 GGGCTTTACCTTCTACGGAACCGTATCTCCTTTACTAGGGGTATTAGGGAAATAGGACGT 384210
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134
||||||| ||||||||||||| || | | |||| | | |||||||| ||||| || |||
Sbjct 384209 TTACTTTAAAAAAATTAGAGTACTCTAGGTAGGCTTATACTCGAATATATTAGTATAGAA 384150
Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194
|||||||||||||||| || ||||| ||| ||||||||||||||||||| ||||||
Sbjct 384149 TAATAGAATAGGACGTATAGTCTTATTTCGTTAATTTCTAGGACCGCCGTAATAATTAAT 384090
Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254
||||||| ||||||| | | |||| |||| | | | ||||||||||| ||| ||| ||
Sbjct 384089 AGGGATAATCGGGGGCATTAATATTTAATTATTAAAAGTGAAATTCTTAGATCGATTAAA 384030
Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314
|| ||| || | ||||||| || || || ||| || | |||| ||||||||||||
Sbjct 384029 GATTAATTATTACGAAAGCATTTACTAAAGATATTNT-ATTA-----GGAACGAAAGTTA 383976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914943002688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |