Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq21337 563 4e-158 seq5557 325 2e-86 >seq21337 Length=2329 Score = 563 bits (624), Expect = 4e-158 Identities = 545/695 (78%), Gaps = 43/695 (6%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGG------------AATGCAGCTCTAAA 70 ||||||||||| |||||||||||||| |||||| ||||| ||||||| Sbjct 1672 TGTGAAGCTCCCTCGACGAGTCGAGTAGTTTGGNNNNNNNNNNNNNAATGCTGCTCTAAG 1613 Query 71 TGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGA 130 |||||||| | | |||| || |||||||| ||| |||||||||||||||||||||||| Sbjct 1612 -GGGAGGTATACTCCTTCCAAGGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGA 1554 Query 131 GTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAA 190 ||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||| || Sbjct 1553 GTGATCGAAAGATGAAAAGTACTTTGAAAAGAGAGTCAAACAGCACGTGAAATTGTTAAA 1494 Query 191 AGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCC-GGTGC 249 ||||||||||| || ||||||| || | || | |||||| | || | || || || Sbjct 1493 AGGGAAGCGCTCGCTACCAGACGTGGGTTCGGTGGTTCAACCAGGTCCATGACCTGGGGC 1434 Query 250 ACTCTTCTGCGGTCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATG 307 |||| | | | |||||||||||||||| | | ||| || |||||| |||||||| Sbjct 1433 ACTCCGCCG-GCCCAGGCCAGCATCAGCTTTCCGTCGG--GGGCAAAGGCGTCGGGAATG 1377 Query 308 TGGCCC-CCTTCGGGGG-GTGTTATAGCCCGG---------------GGTGGAATGCGGC 350 |||| | |||||||||| ||||||||||||| || || || || Sbjct 1376 TGGCTCTCCTTCGGGGGAGTGTTATAGCCCGTCGCGTCATACTCTTCGGGGGGCTGAGGN 1317 Query 351 CCGCCTGGA--CTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGC 408 | | || ||||||| ||||||||| | ||||||||||||||||||| | || | | Sbjct 1316 TCTTCGGGGGGCTGAGGTACGCGCTCCG-CAAGGATGCTGGCGTAATGGTAGCTAGTGAC 1258 Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCC 468 |||||||| |||||||||||||||||| | | | | |||||||| ||| || |||||| Sbjct 1257 CCGTCTTGAAACACGGACCAAGGAGTCAACCTTATGTGCGAGTGCCCGGGCGTAAAACCC 1198 Query 469 GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCC 528 ||||| |||||||||||||| ||||| || | || ||| || |||||||||| Sbjct 1197 CAGCGCGGAATGAAAGTGAACGTAGGTGAGAGCTTC----GGCGCATCACCGACCGATCC 1142 Query 529 TGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC 588 ||||||| ||||| |||||||||| |||||||| | | |||||||||||| | ||||| Sbjct 1141 TGATGTCCTCGGACGGATTTGAGTGAGAGCATATAGGGTTGGACCCGAAAGAAGATGAAC 1082 Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1081 TATGCGTGTGTAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACG 1022 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||| || | || ||||||| Sbjct 1021 TGCAAATCGATCGTCAAACATGCGCATGGGGGCGA 987 >seq5557 Length=585122 Score = 325 bits (360), Expect = 2e-86 Identities = 476/661 (72%), Gaps = 13/661 (2%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||| |||| |||||||| |||| ||||| | ||||||| |||||||| | | || Sbjct 382510 AAGCTCCCTCGATAAGTCGAGTAGTTTAGGAATACTACTCTAAA-GGGAGGTATACTCCT 382452 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||| |||||||| | || ||||||||||||| | || |||||| |||||||||| || Sbjct 382451 TCTAAGGCTAAATACTAGCTAGAGACCGATAGCATATAAATAGAGTAATCGAAAGATAAA 382392 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| ||||| ||||||| ||||| || | | ||||| || ||||||||||||| || | Sbjct 382391 AAGTACTTTAAAAAGAGAATTAAATAGTATATAAAATTATTAAAAGGGAAGCGCTCGCTA 382332 Query 207 CCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC-A 264 | |||| | | || | ||| || | | | |||||| | ||| | | Sbjct 382331 CTAGACGTAGGTTCGGTAATTTAACTAGGTTTATAACCTAGGGCACTCCGC--CGGCCTA 382274 Query 265 GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCC-CCTTCGGGGG 323 ||| ||||| |||| || |||||| ||||||| | || | ||||| |||| Sbjct 382273 GGCTAGCATTAGCTTTCTATTAAGGGCAAAGGCGTCGGGAATATAGCTCTCCTTCAGGGG 382214 Query 324 -GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGG 382 || ||||||||| || || | | || || |||| ||||||||| ||| Sbjct 382213 AGTATTATAGCCCATCGTATTATACC-CTTTAGGGGGCTAAGGTACGCGCTCCGTA-AGG 382156 Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442 || || || |||| || | || ||||||||| || |||||| |||||||| | | | Sbjct 382155 ATACTAGCATAATAGTAGCTAGTAACCCGTCTTGAAATACGGACTAAGGAGTCAATCTTA 382096 Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502 ||| ||| | ||| || |||||| ||||| ||||||||| |||| | || || Sbjct 382095 TATACGAATACCCGGGCGTAAAACCCTAGCGCGGAATGAAAGTAAACGTAAGTA--AAAG 382038 Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | | || || | | ||||||||||| || || ||||| |||||| |||||||| ||| Sbjct 382037 CTTTAGCGT--ATTACCGACCGATCCTAATATCCTCGGACGGATTTAAGTAAGAGTATAT 381980 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 | | ||||||||||| | | |||||| | | ||| ||| |||| |||||||||||| Sbjct 381979 AGGGTTAGACCCGAAAGAAGATAAACTATACGTATATAAGGTAAAGCTAGAGGAAACTCT 381920 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 || |||||||| ||||||||| ||| ||||||||||| |||| | ||||||||||| Sbjct 381919 AGTAGAGGCTCGTAGCGGTTCTAACGTATAAATCGATCGTTAAATATACGTATAGGGGCG 381860 Query 683 A 683 | Sbjct 381859 A 381859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079397662550