Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq21337 563 4e-158
seq5557 325 2e-86
>seq21337
Length=2329
Score = 563 bits (624), Expect = 4e-158
Identities = 545/695 (78%), Gaps = 43/695 (6%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGG------------AATGCAGCTCTAAA 70
||||||||||| |||||||||||||| |||||| ||||| |||||||
Sbjct 1672 TGTGAAGCTCCCTCGACGAGTCGAGTAGTTTGGNNNNNNNNNNNNNAATGCTGCTCTAAG 1613
Query 71 TGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGA 130
|||||||| | | |||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 1612 -GGGAGGTATACTCCTTCCAAGGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGA 1554
Query 131 GTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAA 190
||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||| ||
Sbjct 1553 GTGATCGAAAGATGAAAAGTACTTTGAAAAGAGAGTCAAACAGCACGTGAAATTGTTAAA 1494
Query 191 AGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCC-GGTGC 249
||||||||||| || ||||||| || | || | |||||| | || | || || ||
Sbjct 1493 AGGGAAGCGCTCGCTACCAGACGTGGGTTCGGTGGTTCAACCAGGTCCATGACCTGGGGC 1434
Query 250 ACTCTTCTGCGGTCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATG 307
|||| | | | |||||||||||||||| | | ||| || |||||| ||||||||
Sbjct 1433 ACTCCGCCG-GCCCAGGCCAGCATCAGCTTTCCGTCGG--GGGCAAAGGCGTCGGGAATG 1377
Query 308 TGGCCC-CCTTCGGGGG-GTGTTATAGCCCGG---------------GGTGGAATGCGGC 350
|||| | |||||||||| ||||||||||||| || || || ||
Sbjct 1376 TGGCTCTCCTTCGGGGGAGTGTTATAGCCCGTCGCGTCATACTCTTCGGGGGGCTGAGGN 1317
Query 351 CCGCCTGGA--CTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGC 408
| | || ||||||| ||||||||| | ||||||||||||||||||| | || | |
Sbjct 1316 TCTTCGGGGGGCTGAGGTACGCGCTCCG-CAAGGATGCTGGCGTAATGGTAGCTAGTGAC 1258
Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCC 468
|||||||| |||||||||||||||||| | | | | |||||||| ||| || ||||||
Sbjct 1257 CCGTCTTGAAACACGGACCAAGGAGTCAACCTTATGTGCGAGTGCCCGGGCGTAAAACCC 1198
Query 469 GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCC 528
||||| |||||||||||||| ||||| || | || ||| || ||||||||||
Sbjct 1197 CAGCGCGGAATGAAAGTGAACGTAGGTGAGAGCTTC----GGCGCATCACCGACCGATCC 1142
Query 529 TGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC 588
||||||| ||||| |||||||||| |||||||| | | |||||||||||| | |||||
Sbjct 1141 TGATGTCCTCGGACGGATTTGAGTGAGAGCATATAGGGTTGGACCCGAAAGAAGATGAAC 1082
Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 TATGCGTGTGTAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACG 1022
Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||||||||||||||| || | || |||||||
Sbjct 1021 TGCAAATCGATCGTCAAACATGCGCATGGGGGCGA 987
>seq5557
Length=585122
Score = 325 bits (360), Expect = 2e-86
Identities = 476/661 (72%), Gaps = 13/661 (2%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||| |||| |||||||| |||| ||||| | ||||||| |||||||| | | ||
Sbjct 382510 AAGCTCCCTCGATAAGTCGAGTAGTTTAGGAATACTACTCTAAA-GGGAGGTATACTCCT 382452
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
||||| |||||||| | || ||||||||||||| | || |||||| |||||||||| ||
Sbjct 382451 TCTAAGGCTAAATACTAGCTAGAGACCGATAGCATATAAATAGAGTAATCGAAAGATAAA 382392
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||| ||||| ||||||| ||||| || | | ||||| || ||||||||||||| || |
Sbjct 382391 AAGTACTTTAAAAAGAGAATTAAATAGTATATAAAATTATTAAAAGGGAAGCGCTCGCTA 382332
Query 207 CCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTC-A 264
| |||| | | || | ||| || | | | |||||| | ||| | |
Sbjct 382331 CTAGACGTAGGTTCGGTAATTTAACTAGGTTTATAACCTAGGGCACTCCGC--CGGCCTA 382274
Query 265 GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCC-CCTTCGGGGG 323
||| ||||| |||| || |||||| ||||||| | || | ||||| ||||
Sbjct 382273 GGCTAGCATTAGCTTTCTATTAAGGGCAAAGGCGTCGGGAATATAGCTCTCCTTCAGGGG 382214
Query 324 -GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGG 382
|| ||||||||| || || | | || || |||| ||||||||| |||
Sbjct 382213 AGTATTATAGCCCATCGTATTATACC-CTTTAGGGGGCTAAGGTACGCGCTCCGTA-AGG 382156
Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442
|| || || |||| || | || ||||||||| || |||||| |||||||| | | |
Sbjct 382155 ATACTAGCATAATAGTAGCTAGTAACCCGTCTTGAAATACGGACTAAGGAGTCAATCTTA 382096
Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502
||| ||| | ||| || |||||| ||||| ||||||||| |||| | || ||
Sbjct 382095 TATACGAATACCCGGGCGTAAAACCCTAGCGCGGAATGAAAGTAAACGTAAGTA--AAAG 382038
Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562
| | || || | | ||||||||||| || || ||||| |||||| |||||||| |||
Sbjct 382037 CTTTAGCGT--ATTACCGACCGATCCTAATATCCTCGGACGGATTTAAGTAAGAGTATAT 381980
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
| | ||||||||||| | | |||||| | | ||| ||| |||| ||||||||||||
Sbjct 381979 AGGGTTAGACCCGAAAGAAGATAAACTATACGTATATAAGGTAAAGCTAGAGGAAACTCT 381920
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
|| |||||||| ||||||||| ||| ||||||||||| |||| | |||||||||||
Sbjct 381919 AGTAGAGGCTCGTAGCGGTTCTAACGTATAAATCGATCGTTAAATATACGTATAGGGGCG 381860
Query 683 A 683
|
Sbjct 381859 A 381859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079397662550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |